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(-) Description

Title :  DIAZABICYCLOOCTENONE ETX2514 BOUND TO CLASS D BETA LACTAMASE OXA-24 FROM A. BAUMANNII
 
Authors :  N. B. Olivier, S. Lahiri
Date :  07 Apr 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym./Biol. Unit :  A
Keywords :  Etx2514, Beta-Lactamase, Pbp Gram Negative, Astrazeneca, Entasis, A. Baumannii, Covalent Inhibitor, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. F. Durand-Reville, S. Guler, J. Comita-Prevoir, B. Chen, N. Bifulco, H. Huynh, S. Lahiri, N. B. Olivier, A. B. Shapiro, S. M. Mcleod, N. M. Carter, N. Gao, D. E. Ehmann, B. Dejonge, B. Andrews, R. A. Giacobbe, J. V. Newman, J. O'Donnell, J. P. Mueller, R. A. Tommasi A. A. Miller
Rational Design Of The Multifunctional Diazabicyclooctenone Etx2514: A Potent New Weapon In The Battle Against Multidru Resistant Acinetobacter Baumannii
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: BLAOXA-33, BLA-OXA-40, BLAOXA-24, BLAOXA-40, OXA-24, OXA40, A8G88_08245
    Mutation: YES
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 470
    Synonym: BETALACTAMASE OXA24,CARBAPENEM-HYDROLYZING BETA-LACTAMASE OXA-40,CARBAPENEM-HYDROLYZING OXACILLINASE,CARBAPENEM-HYDROLYZING OXACILLINASE OXA-40,CARBAPENEMASE OXA-24,CLASS D BETA-LACTAMASE,CLASS D BETA-LACTAMASE OXA-40,OXA24 B-LACTAMASE,OXA40

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
19CM1Ligand/Ion(2S,5R)-4-METHYL-7-OXO-6-(SULFOOXY)-1,6-DIAZABICYCLO[3.2.1]OCT-3-ENE-2-CARBOXAMIDE
29CP1Ligand/Ion(2S,5R)-1-FORMYL-4-METHYL-5-[(SULFOOXY)AMINO]-1,2,5,6-TETRAHYDROPYRIDINE-2-CARBOXAMIDE
3KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4SO45Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:141 , LEU A:142 , GLU A:143 , HOH A:430 , HOH A:465binding site for residue SO4 A 301
2AC2SOFTWARELYS A:194 , LEU A:195 , HOH A:411 , HOH A:517binding site for residue SO4 A 302
3AC3SOFTWAREHIS A:188 , GLY A:241 , LYS A:242 , LYS A:243 , HOH A:518binding site for residue SO4 A 303
4AC4SOFTWAREGLN A:178 , ASN A:181 , HOH A:405 , HOH A:463 , HOH A:472 , HOH A:509 , HOH A:568binding site for residue SO4 A 304
5AC5SOFTWAREARG A:190binding site for residue SO4 A 305
6AC6SOFTWAREALA A:80 , SER A:81 , KCX A:84 , TYR A:112 , SER A:128 , VAL A:130 , LYS A:218 , SER A:219 , GLY A:220 , TRP A:221 , MET A:223 , ARG A:261 , 9CM A:307 , HOH A:551 , HOH A:567binding site for residue 9CP A 306
7AC7SOFTWARETYR A:112 , PRO A:113 , MET A:114 , TRP A:115 , LEU A:127 , 9CP A:306 , HOH A:415binding site for residue 9CM A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VFD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:170 -Pro A:171
2Thr A:226 -Pro A:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VFD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VFD)

(-) Exons   (0, 0)

(no "Exon" information available for 5VFD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...eeeeeee..eeeeee.hhhhhhh...hhhhhhhhhhhhhhhh.................hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhh.eeeee..eeeeeeeee......eeeeeeeeee.....eeeeeeeeee.....hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vfd A  32 HISSQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVPASTFkMLNALIGLENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLPFKLETQEEVKKMLLIKEVNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMSGSIRNEITYKSLENLGII 275
                                    41        51        61        71        81  |     91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271    
                                                                               84-KCX
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VFD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VFD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VFD)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:170 - Pro A:171   [ RasMol ]  
    Thr A:226 - Pro A:227   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8RLA6_ACIBA | Q8RLA6: 2jc7 3fv7 3fyz 3fzc 3g4p 3mbz 3pae 3pag 3znt 4f94 4wm9 5tg4 5tg5 5tg6 5tg7

(-) Related Entries Specified in the PDB File

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