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(-) Description

Title :  SOLUTION STRUCTURE OF A DNA DODECAMER WITH 5-METHYLCYTOSINE AT THE 3RD POSITION AND 8-OXOGUANINE AT THE 10TH POSITION
 
Authors :  D. R. Gruber, J. J. Hoppins, H. L. Miears, A. V. Endutkin, D. O. Zharkov, S. L. Smirnov
Date :  24 Feb 17  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (12x)
NMR Structure *:  A,B  (1x)
Keywords :  Drew-Dickerson, Dna, Non-Canonical, Modified Dna, Methylated Dna, Epigenetics, 8-Oxoguanine, Oxidized Dna, Cpg Site (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. R. Gruber, J. J. Hoppins, H. L. Miears, A. V. Endutkin, D. O. Zharkov, S. L. Smirnov
Solution Structure Of A Dna Dodecamer With 5-Methylcytosine At The 3Rd Position 8-Oxoguanine At The 10Th Position
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*(DMC)P*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (12x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

NMR Structure (2, 4)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
28OG2Mod. Nucleotide8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
NMR Structure * (2, 4)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
28OG2Mod. Nucleotide8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 5UZ1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UZ1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UZ1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UZ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UZ1)

(-) Exons   (0, 0)

(no "Exon" information available for 5UZ1)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  5uz1 A  1 CGxGAATTCxCG 12
                              |     10  
                              |     10-8OG
                              3-5CM     


Chain B from PDB  Type:DNA  Length:12
                                           
                  5uz1 B 13 CGxGAATTCxCG 24
                              |     22  
                              |     22-8OG
                             15-5CM
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UZ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UZ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UZ1)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

5uz2 5uz3