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(-) Description

Title :  YFEA WITH METAL BOUND TO SITE 2 - MN WAVELENGTH
 
Authors :  C. D. Radka, L. J. Delucas, S. G. Aller
Date :  24 Feb 17  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A
Keywords :  Polyspecific, Transition Metal, Transport, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. D. Radka, L. J. Delucas, L. S. Wilson, M. B. Lawrenz, R. D. Perry, S. G. Aller
Crystal Structure Of Yersinia Pestis Virulence Factor Yfea Reveals Two Polyspecific Metal-Binding Sites
Acta Crystallogr. , Sect. D V. 73 573 2017
PubMed: search  |  Reference-DOI: 10.1107/S2059798317007045

(-) Compounds

Molecule 1 - PERIPLASMIC CHELATED IRON-BINDING PROTEIN YFEA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YFEA, YPO2439, Y1897, YP_2227
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:76 , HIS A:141 , GLU A:207 , ASP A:282binding site for residue MN A 401
2AC2SOFTWAREHIS A:163 , HOH A:627 , HOH A:639 , HOH A:659binding site for residue MN A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UYH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:277 -Val A:278

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UYH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UYH)

(-) Exons   (0, 0)

(no "Exon" information available for 5UYH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhhhhhhhhhh..eeeee.............hhhhhhhhhh..eeee.......hhhhhhh......eee.....................hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhh.eeeeee..hhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhh..ee.......hhhhhhhhhhh..ee.................hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uyh A  38 TAKKFKVVTTFTIIQDIAQNIAGDVAVVESITKPGAEIHDYQPTPRDIVKAQSADLILWNGMNLERWFEKFFESIKDVPSAVVTAGITPLPIREGPYSGIANPHAWMSPSNALIYIENIRKALVEHDPAHAETYNRNAQAYAEKIKALDAPLRERLSRIPAEQRWLVTSEGAFSYLAKDYGFKEVYLWPINAEQQGIPQQVRHVIDIIRENKIPVVFSESTISDKPAKQVSKETGAQYGGVLYVDSLSGEKGPVPTYISLINMTVDTIAKGF 309
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UYH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UYH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UYH)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5UYH)

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  YFEA_YERPE | Q56952
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YFEA_YERPE | Q56952: 5uxs 5uxu 5uy0 5uy4 5uy5 5uya 5uyb 5uyc 5uyd 5uye 5uyf 5uyg 5uyv 5uyw

(-) Related Entries Specified in the PDB File

5uyg YFEA WITH METAL BOUND TO SITE 2 - MN