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(-) Description

Title :  CLOSTRIDIUM DIFFICILE TOXIN A (TCDA) GLUCOSYLTRANSFERASE DOMAIN IN COMPLEX WITH U2F
 
Authors :  J. W. Alvin, D. B. Lacy
Date :  08 Feb 17  (Deposition) - 10 May 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.97
Chains :  Asym./Biol. Unit :  A
Keywords :  Glucosyltransferase, Toxin, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Alvin, D. B. Lacy
Clostridium Difficile Toxin Glucosyltransferase Domains In Complex With A Non-Hydrolyzable Udp-Glucose Analogue.
J. Struct. Biol. V. 198 203 2017
PubMed-ID: 28433497  |  Reference-DOI: 10.1016/J.JSB.2017.04.006

(-) Compounds

Molecule 1 - TOXIN A
    Chains: A
    EC Number: 3.4.22.-
    Engineered: YES
    Expression System: BACILLUS MEGATERIUM
    Expression System Plasmid: PHIS1622
    Expression System Taxid: 1404
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-544
    Gene: TOXA, TCDA
    Organism Scientific: CLOSTRIDIOIDES DIFFICILE
    Organism Taxid: 1496

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MN1Ligand/IonMANGANESE (II) ION
2U2F1Ligand/IonURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:287 , GLU A:514 , U2F A:602 , HOH A:711 , HOH A:795binding site for residue MN A 601
2AC2SOFTWAREVAL A:100 , TRP A:101 , ILE A:102 , ASN A:138 , LEU A:264 , ALA A:265 , SER A:268 , ASP A:269 , ARG A:272 , TYR A:283 , ASP A:285 , VAL A:286 , ASP A:287 , ILE A:382 , ASN A:383 , GLN A:384 , GLY A:469 , GLU A:514 , SER A:517 , LEU A:518 , TRP A:519 , MN A:601 , HOH A:803 , HOH A:830 , HOH A:884 , HOH A:887 , HOH A:948binding site for residue U2F A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UQL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UQL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UQL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UQL)

(-) Exons   (0, 0)

(no "Exon" information available for 5UQL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:542
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...ee...eeeee......hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eee.hhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhheeee......................hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhhh......ee.....eeeee..eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh.hhhhh....hhhhh.....hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uql A   1 MSLISKEELIKLAYSIRPRENEYKTILTNLDEYNKLTTNNNENKYLQLKKLNESIDVFMNKYKTSSRNRALSNLKKDILKEVILIKNSNTSPVEKNLHFVWIGGEVSDIALEYIKQWADINAEYNIKLWYDSEAFLVNTLKKAIVESSTTEALQLLEEEIQNPQFDNMKFYKKRMEFIYDRQKRFINYYKSQINKPTVPTIDDIIKSHLVSEYNRDETVLESYRTNSLRKINSNHGIDIRANSLFTEQELLNIYSQELLNRGNLAAASDIVRLLALKNFGGVYLDVDMLPGIHSDLFKTISRPSSIGLDRWEMIKLEAIMKYKKYINNYTSENFDKLDQQLKDNFKLIIESKSEKSEIFSKLENLNVSDLEIKIAFALGSVINQALISKQGSYLTNLVIEQVKNRYQFLNQHLNPAIESDNNFTDTTKIFHDSLFNSATAENSMFLTKIAPYLQVGFMPEARSTISLSGPGAYASAYYDFINLQENTIEKTLKASDLIEFKFPENNLSQLTEQEINSLWSFDQASAKYQFEKYVRDYTGGSL 542
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UQL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UQL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UQL)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TOXA_CLODI | P16154: 2f6e 2g7c 2qj6 3ho6 4dmv 4dmw 4r04 5uqk

(-) Related Entries Specified in the PDB File

5uqk 5uqm 5uqn 5uqt