5UPD - JenaLib

Title :   METHYLTRANSFERASE DOMAIN OF HUMAN WOLF-HIRSCHHORN SYNDROME CANDIDATE 1-LIKE PROTEIN 1 (WHSC1L1)

Authors :   W. Tempel, W. Yu, A. Dong, T. Cerovina, C. Bountra, C. H. Arrowsmith, A. M P. J. Brown, H. Wu, Structural Genomics Consortium (Sgc)

Date :   02 Feb 17 (Deposition) - 15 Feb 17 (Release) - 08 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics Consortium, Methyl Transferase, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. Tempel, W. Yu, A. Dong, T. Cerovina, C. Bountra, C. H. Arrowsmith, A. M. Edwards, P. J. Brown, H. Wu
Methyltransferase Domain Of Human Wolf-Hirschhorn Syndrome Candidate 1-Like Protein 1 (Whsc1L1)
To Be Published
PubMed: search

Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE NSD3
	Chains	:	A
	EC Number	:	2.1.1.43
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28-MHL
	Expression System Strain	:	BL21 (DE3) PRARE-V2R
	Expression System Taxid	:	469008
	Gene	:	WHSC1L1, NSD3, DC28
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	NUCLEAR SET DOMAIN-CONTAINING PROTEIN 3,PROTEIN WHISTLE, WHSC1-LIKE 1 ISOFORM 9 WITH METHYLTRANSFERASE ACTIVITY TO LYSINE, WOLF-HIRSCHHORN SYNDROME CANDIDATE 1-LIKE PROTEIN 1,WHSC1-LIKE PROTEIN 1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 21)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:1155 , TRP A:1157 , THR A:1197 , ASN A:1198 , PHE A:1199 , TYR A:1200 , ARG A:1220 , ASN A:1223 , HIS A:1224 , TYR A:1261 , GLU A:1272 , CYS A:1273 , HIS A:1274 , LEU A:1284 , HOH A:1433 , HOH A:1438 , HOH A:1444 , HOH A:1456 , HOH A:1483	binding site for residue SAM A 1301
2	AC2	SOFTWARE	CYS A:1098 , CYS A:1100 , CYS A:1108 , CYS A:1114	binding site for residue ZN A 1319
3	AC3	SOFTWARE	CYS A:1108 , CYS A:1123 , CYS A:1128 , CYS A:1134	binding site for residue ZN A 1320
4	AC4	SOFTWARE	CYS A:1226 , CYS A:1273 , CYS A:1275 , CYS A:1280	binding site for residue ZN A 1321

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee....ee.........hhhhh..................hhhhhh.................hhhhhh....eeeee.....eeeee........eeeee..eeehhhhhhhhhhhhhhh......eeeee..eeee...eehhhhhhee.....eeeeeeee..eeeeeeee..........ee....................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5upd A 1069 KPPPYKHIKANKVIGKVQIQVADLSEIPRCNCKPADENPCGLESECLNRMLQYECHPQVCPAGDRCQNQCFTKRLYPDAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENSVTNFYMLTVTKDRIIDAGPKGNYSRFMNHSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNYNLGNGRTECHCGADNCSGFLG 1285
                                  1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238      1248      1258    ||1271      1281    
                                                                                                                                                                                                                           1263|                  
                                                                                                                                                                                                                            1267

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

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Description