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(-) Description

Title :  CRYSTAL STRUCTURE OF NADPH-DEPENDENT GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE SMC02828 (SMGHRA) FROM SINORHIZOBIUM MELILOTI IN APO FORM
 
Authors :  I. G. Shabalin, C. Larowe, J. Kutner, O. A. Gasiorowska, K. B. Handing, J S. C. Almo, W. Minor, New York Structural Genomics Research Cons (Nysgrc)
Date :  31 Jan 17  (Deposition) - 22 Feb 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  New York Structural Genomics Research Consortium, Nadp-Dependent Dehydrogenase, Sinorhizobium Meliloti, Psi-Biology, Nysgrc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. G. Shabalin, J. Kutner, O. A. Gasiorowska, K. B. Handing, W. Minor
Crystal Structure Of Nadp-Dependent Dehydrogenase From Sinorhizobium Meliloti In Apo Form
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NADPH-DEPENDENT GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE
    Chains: A, B
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGC-HIS
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SMC02828
    Organism Common: ENSIFER MELILOTI
    Organism Scientific: RHIZOBIUM MELILOTI (STRAIN 1021)
    Organism Taxid: 266834
    Strain: 1021

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:113 , PHE A:224 , GLY A:253 , HOH A:502 , HOH A:503binding site for residue GOL A 401
2AC2SOFTWAREARG A:170binding site for residue CL A 402
3AC3SOFTWAREHIS B:113 , PHE B:224 , HOH B:505 , HOH B:520binding site for residue GOL B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UNN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:263 -Pro A:264
2Glu B:263 -Pro B:264

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UNN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UNN)

(-) Exons   (0, 0)

(no "Exon" information available for 5UNN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhh.....eeeee.ee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhh.eeeee..hhhhhhhhhhhhhh..eeeee..........eee...hhhhhhhhh.eeee....hhhhh...hhhhhhh..........eeee..hhhhhhhhhhhhhhhhh...eeee...........hhhhhh..eee........hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5unn A   7 VIVDLKFIPEEVEAALAGAFPVIDLADVVWKSFSGGAVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESEHVV 313
                                    16        26||    ||53 ||   ||93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303 ||   
                                               27|   36|  55|  74|                                                                                                                                                                                                                   305|   
                                                31    51   70   91                                                                                                                                                                                                                    310   


Chain B from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhh.eeeee..hhhhhhhhhhhhhhh.eeeee..........eee...hhhhhhhhh.eeee............hhhhhh...........eeee..hhhhhhhhhhhhhhhhh...eeee...........hhhhhh..eee............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5unn B  93 FVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRAL 292
                                   102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UNN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UNN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UNN)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q92T34_RHIME | Q92T34: 4weq 4z0p

(-) Related Entries Specified in the PDB File

4weq COMPLEX WITH NADP AND SULFATE RELATED ID: NYSGRC-011884 RELATED DB: TARGETTRACK
4z0p COMPLEX WITH NADPH AND OXALATE
5uog