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(-) Description

Title :  APO-STRUCTURE OF MATURE GROWTH DIFFERENTIATION FACTOR 11
 
Authors :  E. Goebel, T. Thompson
Date :  11 Jan 17  (Deposition) - 22 Mar 17  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tgfb Gdf11 Apo Activin, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. G. Walker, M. Czepnik, E. J. Goebel, J. C. Mccoy, A. Vujic, M. Cho, J. Oh, S. Aykul, K. L. Walton, G. Schang, D. J. Bernard, A. P. Hinck, C. A. Harrison, E. Martinez-Hackert, A. J. Wagers, R. T. Lee, T. B. Thompson
Structural Basis For Potency Differences Between Gdf8 And Gdf11.
Bmc Biol. V. 15 19 2017
PubMed-ID: 28257634  |  Reference-DOI: 10.1186/S12915-017-0350-1

(-) Compounds

Molecule 1 - GROWTH/DIFFERENTIATION FACTOR 11
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GDF11, BMP11
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GDF-11,BONE MORPHOGENETIC PROTEIN 11,BMP-11

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5UHM)

(-) Sites  (0, 0)

(no "Site" information available for 5UHM)

(-) SS Bonds  (9, 9)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:16
2A:15 -A:74
3A:43 -A:106
4A:47 -A:108
5A:73 -B:73
6B:6 -B:16
7B:15 -B:74
8B:43 -B:106
9B:47 -B:108

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ala A:34 -Pro A:35
2Gly A:71 -Pro A:72
3Ala B:34 -Pro B:35

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UHM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UHM)

(-) Exons   (0, 0)

(no "Exon" information available for 5UHM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eee..eee........eee..eee..eee......eeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 5uhm A   1 NLGLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEGPCCTPTKMSPINMLYFNDKQQIIYGKIPGMVVDRCGCS 109
                                    10        20        30        40       |72        82        92       102       
                                                                          48|                                      
                                                                           71                                      


Chain B from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..........eee..eee.hhhh...eee..eee..eee......eeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 5uhm B   1 NLGLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEGPCCTPTKMSPINMLYFNDKQQIIYGKIPGMVVDRCGCS 109
                                    10        20        30        40       |72        82        92       102       
                                                                          48|                                      
                                                                           71
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UHM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UHM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UHM)

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 5uhm)
 
  Cis Peptide Bonds
    Ala A:34 - Pro A:35   [ RasMol ]  
    Ala B:34 - Pro B:35   [ RasMol ]  
    Gly A:71 - Pro A:72   [ RasMol ]  
 

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  5uhm
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  GDF11_HUMAN | O95390
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GDF11_HUMAN | O95390: 5e4g 5jhw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5UHM)