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(-) Description

Title :  STRUCTURE OF THE EFFECTOR PROTEIN SIDK (LPG0968) FROM LEGIONELLA PNEUMOPHILA
 
Authors :  K. Beyrakhova, C. Xu, M. T. Boniecki, M. Cygler
Date :  04 Jan 17  (Deposition) - 10 May 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Translocated Effector, V-Atpase Binding, All-Alpha-Helical, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhao, K. Beyrakhova, Y. Liu, C. P. Alvarez, S. A. Bueler, L. Xu, C. Xu, M. T. Boniecki, V. Kanelis, Z. Q. Luo, M. Cygler, J. L. Rubinstein
Molecular Basis For The Binding And Modulation Of V-Atpase By A Bacterial Effector Protein.
Plos Pathog. V. 13 06394 2017
PubMed-ID: 28570695  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006394

(-) Compounds

Molecule 1 - EFFECTOR PROTEIN SIDK
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LPG_0968
    Organism Scientific: LEGIONELLA PNEUMOPHILA
    Organism Taxid: 446
    Other Details: SOLVENT-EXPOSED EPSILON-AMINO GROUPS OF LYSINES WERE MODIFIED BY REDUCTIVE METHYLATION

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MLY5Mod. Amino AcidN-DIMETHYL-LYSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:59 , GLU A:64binding site for residue GOL A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UFK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:99 -Pro A:100

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UFK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UFK)

(-) Exons   (0, 0)

(no "Exon" information available for 5UFK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ufk A   0 AEQYHSQVVGkIGYIARCMQTIDPENNLKKIREDYQDVLIWAEKNYRFEEILEASKSGKCPNDLDALSRRSLILQELLRLVSSISPFKMKLDLIESQYEKMKQHVNLWKSDYHVkLNQLNQLTDYLKNAAPTPKNNFLRAMTSVLQMQIAQYGITEDNEGINQLFkLGLHLLAMANEKIDEQYHLFkGYVKDQPEESPFEGILPAEDQKILVKTMIDYAMPKLSSKVLQDKLSALSSSDVLTkTLLDSIDRIVKENEKLNA 275
                            ||      24|       34        44        54        64        74        84        94       104       114       124    |  134       144       154       164       174     | 184       194      |204       214       224       234       244       254  |    264       274 
                            ||       25-MLY                                                                                                 129-MLY                                            180-MLY              201-MLY                                                 257-MLY              
                            0|                                                                                                                                                                                                                                                                   
                            16
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UFK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UFK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UFK)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5UFK)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G8UUS6_LEGPN | G8UUS6: 5uf5 5vox 5voy 5voz

(-) Related Entries Specified in the PDB File

5uf5 5UF5 CONTAINS THE SAME PROTEIN IN THE FORM OF A DIMER