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(-) Description

Title :  RIP1 KINASE ( FLAG 1-294, C34A, C127A, C233A, C240A) WITH GSK772
 
Authors :  N. Campobasso, P. Ward, J. Thrope
Date :  15 Nov 16  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase Domain Inhibitor Necrosis, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. A. Harris, S. B. Berger, J. U. Jeong, R. Nagilla, D. Bandyopadhyay, N. Campobasso, C. A. Capriotti, J. A. Cox, L. Dare, X. Dong, P. M. Eidam, J. N. Finger, S. J. Hoffman, J. Kang, V. Kasparcova, B. W. King, R. Lehr, Y. Lan, L. K. Leister, J. D. Lich, T. T. Macdonald, N. A. Miller, M. T. Ouellette, C. S. Pao, A. Rahman, M. A. Reilly, A. R. Rendina, E. J. Rivera, M. C. Schaeffer, C. A. Sehon, R. R. Singhaus, H. H. Sun, B. A. Swift, R. D. Totoritis, A. Vossenkamper, P. Ward, D. D. Wisnoski, D. Zhang, R. W. Marquis, P. J. Gough, J. Bertin
Discovery Of A First-In-Class Receptor Interacting Protein (Rip1) Kinase Specific Clinical Candidate (Gsk2982772) For The Treatment Of Inflammatory Diseases.
J. Med. Chem. V. 60 1247 2017
PubMed-ID: 28151659  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01751

(-) Compounds

Molecule 1 - RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Taxid: 10469
    Gene: RIPK1, RIP, RIP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CELL DEATH PROTEIN RIP,RECEPTOR-INTERACTING PROTEIN 1,RIP-1, SERINE/THREONINE-PROTEIN KINASE RIP

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
17MJ2Ligand/Ion3-BENZYL-N-[(3S)-5-METHYL-4-OXO-2,3,4,5-TETRAHYDRO-1,5-BENZOXAZEPIN-3-YL]-1H-1,2,4-TRIAZOLE-5-CARBOXAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:31 , LYS A:45 , MET A:67 , VAL A:76 , LEU A:78 , LEU A:90 , MET A:92 , HIS A:136 , ILE A:154 , ALA A:155 , ASP A:156 , LEU A:157 , LEU A:159 , PHE A:162 , HOH A:403binding site for residue 7MJ A 301
2AC2SOFTWAREILE B:43 , LYS B:45 , LEU B:70 , VAL B:76 , LEU B:78 , LEU B:90 , MET B:92 , HIS B:136 , ILE B:154 , ALA B:155 , ASP B:156 , LEU B:157 , PHE B:162 , HOH B:403binding site for residue 7MJ B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TX5)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu B:254 -Tyr B:255

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TX5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TX5)

(-) Exons   (0, 0)

(no "Exon" information available for 5TX5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhh.eeeeeee.....eeeeee...eeeeeeeeee......hhhhhhhhhhhhhh........eeeeee...eeeeeee.....hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......hhhhhhh...................hhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhh....hhhhhhhhhhhh........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tx5 A  10 IKMKSSDFLESAELDSGGKVSLAFHRTQGLMIMKTVYKGPNCIEHNEALLEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVMEYMEKGNLMHVLKAEMSTPLSVKGRIILEIIEGMAYLHGKGVIHKDLKPENILVDNDFHIKIADLGLASFKMWSKLNGTLYYMAPEHLNDVNAKPTEKSDVYSFAVVLWAIFANKEPYQQLIMAIKSGNRPDVDDITEYCPREIISLMKLCWEANPEARPTFPGIEEKFRPFYLSQLE 294
                                    19      ||31        41        51        61        71        81        91       101       111       121       131       141       151       161       189       199       209       219       235       245       255       265       275       285         
                                           26|                                                                                                                                         169|                                     228|                                                           
                                            29                                                                                                                                          188                                      235                                                           


Chain B from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh....eeee...eeeeeeeee....hhhhhhhhhhhhhhhhh........eeeeeee..eeeeeee....eehhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......hhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh....hhhhhh...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tx5 B   9 VIKMKSSDFLESSLAFHRTQGLMIMKTVYKGPNCIEHNEALLEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVMEYMEKGNLMHVLKAEMSTPLSVKGRIILEIIEGMAYLHGKGVIHKDLKPENILVDNDFHIKIADLGLASFKMWSKLNNEEHNELTLYYMAPEHLNDVNAKPTEKSDVYSFAVVLWAIFANKEPYENAIAEQQLIMAIKSGNRPDVDDITEYCPREIISLMKLCWEANPEARPTFPGIEEKFRPFYLSQLE 294
                                    18 ||     39        49        59        69        79        89        99       109       119       129       139       149       159       169      |191       201       211       221       231       241       251       261       271       281       291   
                                      20|                                                                                                                                             176|                                                                                                         
                                       32                                                                                                                                              189
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TX5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TX5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TX5)

(-) Gene Ontology  (75, 75)

Asymmetric/Biological Unit(hide GO term definitions)

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  RIPK1_HUMAN | Q13546
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIPK1_HUMAN | Q13546: 4ith 4iti 4itj 4neu 5hx6

(-) Related Entries Specified in the PDB File

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