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(-) Description

Title :  CRYSTAL STRUCTURE AND LIGHT INDUCED STRUCTURAL CHANGES IN ORANGE CAROTENOID PROTEIN BOUND WITH 3 'OH ECHINENONE
 
Authors :  X. Yang, S. Bandara, Z. Ren
Date :  07 Nov 16  (Deposition) - 07 Jun 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Photoprotection, Photoreceptor, Dynamic Crystallography, Carotenoid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bandara, Z. Ren, L. Lu, X. Zeng, H. Shin, K. H. Zhao, X. Yang
Photoactivation Mechanism Of A Carotenoid-Based Photoreceptor.
Proc. Natl. Acad. Sci. V. 114 6286 2017 U. S. A.
PubMed-ID: 28559328  |  Reference-DOI: 10.1073/PNAS.1700956114

(-) Compounds

Molecule 1 - ORANGE CAROTENOID-BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: SYNECHOCYSTIS SP. PCC 6803
    Expression System Taxid: 1148
    Gene: SLR1963
    Organism Scientific: SYNECHOCYSTIS SP. (STRAIN PCC 6803 / KAZUSA)
    Organism Taxid: 1111708
    Strain: PCC 6803 / KAZUSA
    Synonym: OCP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1EQ31Ligand/Ion(3'R)-3'-HYDROXY-BETA,BETA-CAROTEN-4-ONE
2GOL1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:55 , PRO A:56 , GLY A:57 , GLU A:174 , PRO A:276 , TRP A:277 , HOH A:521 , HOH A:522 , HOH A:538 , HOH A:580binding site for residue GOL A 401
2AC2SOFTWARELEU A:37 , ILE A:40 , TYR A:44 , TRP A:110 , TYR A:111 , GLY A:114 , ILE A:151 , THR A:152 , ARG A:155 , VAL A:158 , TYR A:201 , LEU A:205 , CYS A:245 , VAL A:273 , THR A:275 , TRP A:277 , TRP A:288 , ILE A:303 , HOH A:558binding site for residue EQ3 A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TV0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TV0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5TV0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.............hhhhh.........hhhhhhhhhhhhh.hhhhhhh.eeeeeeee......eehhhhhhhhhhhhh...eeeeeeeeeee.hhh.eeeeeeeeee...hhhhh.eeeeeeeee.....eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tv0 A   2 PFTIDSARGIFPNTLAADVVPATIARFSQLNAEDQLALIWFAYLEMGKTLTIAAPGAASMQLAENALKEIQAMGPLQQTQAMCDLANRADTPLCRTYASWSPNIKLGFWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVVDMGFRIAEPVVPPQDTASRTKVSIEGVTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQRPIVGKENVLRFFREECQNLKLIPERGVTEPAEDGFTQIKVTGKVQTPWFGGNVGMNIAWRFLLNPEGKIFFVAIDLLASPKEL 312
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161 ||    178       188       198       208       218       228       238       248       258       268       278       288       298       308    
                                                                                                                                                                                           163|                                                                                                                                             
                                                                                                                                                                                            171
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TV0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TV0)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OCP_SYNY3 | P74102: 3mg1 3mg2 3mg3 4xb4 4xb5 5tuw 5tux

(-) Related Entries Specified in the PDB File

5tuw 5tux