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(-) Description

Title :  CRYSTAL STRUCTURE OF ENOYL-(ACYL CARRIER PROTEIN) REDUCTASE FROM BURKHOLDERIA PSEUDOMALLEI 1710B BOUND TO NAD
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  27 Oct 16  (Deposition) - 16 Nov 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Enoyl [Acyl Carrier Protein] Reductase (Nadh) Activity Oxidoreductase Activity, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Ssgcid, S. L. Delker, P. S. Horanyi, D. Lorimer, T. E. Edwards
Crystal Structure Of Enoyl-(Acyl Carrier Protein) Reductase From Burkholderia Pseudomallei 1710B Bound To Nad
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]
    Chains: A, B, C, D
    EC Number: 1.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FABI, BURPS1710B_2636
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI (STRAIN 1710B)
    Organism Taxid: 320372
    Strain: 1710B
    Synonym: BUPSA.00010.B.B1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric/Biological Unit (2, 13)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:223 , HOH A:491 , HOH D:538binding site for residue EDO A 301
02AC2SOFTWAREGLU A:58 , VAL A:60 , HIS A:81 , HOH A:556binding site for residue EDO A 302
03AC3SOFTWAREGLY A:13 , LEU A:15 , ILE A:20 , VAL A:40 , CYS A:63 , ASP A:64 , VAL A:65 , SER A:91 , ILE A:92 , GLY A:93 , LEU A:144 , SER A:145 , LYS A:163 , ALA A:189 , GLY A:190 , PRO A:191 , ILE A:192 , HOH A:414 , HOH A:426 , HOH A:433 , HOH A:437 , HOH A:480 , HOH A:511 , HOH A:552 , HOH A:558binding site for residue NAD A 303
04AC4SOFTWAREALA A:76 , GLU A:98 , PRO A:133 , HOH A:404 , HOH A:584binding site for residue EDO A 304
05AC5SOFTWAREARG A:110 , ALA B:66 , ASP B:67 , ASP B:68 , HOH B:411 , HOH B:494binding site for residue EDO B 301
06AC6SOFTWAREGLY B:13 , LEU B:15 , SER B:19 , ILE B:20 , VAL B:40 , CYS B:63 , ASP B:64 , VAL B:65 , SER B:91 , ILE B:92 , GLY B:93 , LEU B:144 , SER B:145 , TYR B:146 , LYS B:163 , ALA B:189 , GLY B:190 , PRO B:191 , ILE B:192 , EDO B:303 , HOH B:410 , HOH B:413 , HOH B:420 , HOH B:431 , HOH B:460 , HOH B:471 , HOH B:481binding site for residue NAD B 302
07AC7SOFTWARETYR B:156 , NAD B:302 , HOH B:410 , HOH B:423binding site for residue EDO B 303
08AC8SOFTWAREALA C:66 , ASP C:68 , HOH C:425 , HOH C:533 , ARG D:110binding site for residue EDO C 301
09AC9SOFTWAREGLY C:13 , LEU C:15 , SER C:19 , ILE C:20 , VAL C:40 , ASP C:64 , VAL C:65 , SER C:91 , ILE C:92 , GLY C:93 , LEU C:144 , SER C:145 , LYS C:163 , ALA C:189 , GLY C:190 , PRO C:191 , ILE C:192 , HOH C:409 , HOH C:415 , HOH C:418 , HOH C:431binding site for residue NAD C 302
10AD1SOFTWAREARG C:110 , ALA D:66 , ASP D:68 , HOH D:422binding site for residue EDO D 301
11AD2SOFTWAREGLY D:13 , LEU D:15 , ILE D:20 , VAL D:40 , CYS D:63 , ASP D:64 , VAL D:65 , SER D:91 , ILE D:92 , GLY D:93 , ILE D:119 , LEU D:144 , SER D:145 , LYS D:163 , ALA D:189 , GLY D:190 , PRO D:191 , ILE D:192 , HOH D:420 , HOH D:423 , HOH D:456 , HOH D:463binding site for residue NAD D 302
12AD3SOFTWAREASN A:252 , HOH A:458 , GLU D:150 , HOH D:449binding site for residue EDO D 303
13AD4SOFTWAREHOH A:438 , ASN D:252 , HOH D:416 , HOH D:430 , HOH D:453binding site for residue EDO D 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TRT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TRT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TRT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TRT)

(-) Exons   (0, 0)

(no "Exon" information available for 5TRT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhh.....eeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5trt A   1 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMA 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         


Chain B from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhh....eeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5trt B   1 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMA 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190 ||    208       218       228       238       248       258 
                                                                                                                                                                                                                         192|                                                          
                                                                                                                                                                                                                          201                                                          


Chain C from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhh....eeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5trt C   1 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM 258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    || 203       213       223       233       243       253     
                                                                                                                                                                                                                            195|                                                           
                                                                                                                                                                                                                             199                                                           


Chain D from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5trt D   1 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMA 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  205       215       225       235       245       255    
                                                                                                                                                                                                                           194|                                                           
                                                                                                                                                                                                                            200
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TRT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TRT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TRT)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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