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(-) Description

Title :  CRYSTAL STRUCTURE OF ASSEMBLY CHAPERONE OF RIBOSOMAL PROTEIN L4 (ACL4) IN COMPLEX WITH RIBOSOMAL PROTEIN L4 (RPL4)
 
Authors :  F. M. Huber, A. Hoelz
Date :  23 Oct 16  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ribosome Assembly Chaperone, Ribosomal Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. M. Huber, A. Hoelz
Molecular Basis For Protection Of Ribosomal Protein L4 From Cellular Degradation.
Nat Commun V. 8 14354 2017
PubMed-ID: 28148929  |  Reference-DOI: 10.1038/NCOMMS14354

(-) Compounds

Molecule 1 - 60S RIBOSOMAL PROTEIN L4-LIKE PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCTHT_0061540
    Organism ScientificCHAETOMIUM THERMOPHILUM
    Organism Taxid759272
    StrainDSM 1495 / CBS 144.50 / IMI 039719
 
Molecule 2 - ASSEMBLY CHAPERONE OF RIBOSOMAL PROTEIN L4 (ACL4)
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCTHT_0010130
    Organism ScientificCHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid759272
    StrainDSM 1495 / CBS 144.50 / IMI 039719

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric/Biological Unit (3, 17)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2MSE8Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:130 , LEU A:136 , VAL A:149 , PRO A:150 , LEU A:151 , ARG A:253 , PHE A:254 , ILE A:255 , HOH A:409binding site for residue EDO A 301
2AC2SOFTWAREVAL A:39 , HIS A:40 , LYS A:109 , ASN A:115 , LYS A:119 , PRO B:253 , PHE B:254binding site for residue EDO A 302
3AC3SOFTWARETRP A:110 , HIS A:111 , VAL A:112 , LYS A:113 , ILE A:114 , GLN B:76 , GLU B:112 , ARG B:170binding site for residue PEG B 401
4AC4SOFTWAREGLU B:278 , ILE B:281 , ALA B:282binding site for residue EDO B 402
5AC5SOFTWAREASP B:285 , TRP B:291 , GLN B:331binding site for residue EDO B 403
6AC6SOFTWARETRP B:210 , PRO B:211 , GLU B:212 , PRO B:252 , PRO B:253 , EDO B:405 , HOH B:511binding site for residue EDO B 404
7AC7SOFTWAREARG A:108 , LYS A:109 , VAL A:112 , GLU B:173 , PRO B:253 , EDO B:404 , EDO B:407binding site for residue EDO B 405
8AC8SOFTWAREALA A:52 , THR A:104 , SER B:259 , ARG B:262 , GLU B:289 , HOH B:504binding site for residue EDO B 406
9AC9SOFTWARETRP B:210 , PRO B:249 , VAL B:251 , PRO B:253 , EDO B:405binding site for residue EDO B 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TQB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val A:149 -Pro A:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TQB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TQB)

(-) Exons   (0, 0)

(no "Exon" information available for 5TQB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....eeeeeee.hhhhhh....hhhhhhh...........ee..........................hhhhhhhhh......ee....hhhhhhhhhhhhhhhhhhhh.hhhhhhhh...........eee.hhhh......hhhhhhhhhhhh.hhhhhhhhh.........eeeehhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhh....eeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tqb A   4 RPTVTVFGADGKPTGATEVLPKVFSAPIRPDIVKHVHTGmAKNKRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGAFGNmCRSGRmFAPTKIWRKWHVKINQGQKRFATASALAASAVAPLLmARGHQVSTVPEVPLVVDSAAVAGDAVAKTAAAYKLLKAIGAGPDVEKVKKSHRQRRGPLIVYSPEHDGKELVKGFRNIPGVETCPVDALNLLQLAPGGHLGRFIVWTSAAIKQLDAVYESK 272
                                    13        23        33        43        53        63        73    ||  93|     |103       113       123       133   |   143       153       163       173       183    || 207       217       227       237       247       257       267     
                                                                  43-MSE                             78|    |     |                                  137-MSE                                            188|                                                                     
                                                                                                      89    |     |                                                                                      203                                                                     
                                                                                                           94-MSE |                                                                                                                                                              
                                                                                                                100-MSE                                                                                                                                                          

Chain B from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tqb B  27 SINPKELLDRATTLLEEGDIETAAKVARTAYEHIGENGRHAGAALTLLGQIHVELGDIDAARNYYAAAVKVDEDGSLPEELGGGPEKFLWLAQLSEEGGHDSVAWFERGATVLRAQIQSLmDSLEQRPLSRGQVEAAIADKRRRLAETLCAVVEVYmTDLSWEDDAEQRCEALITEATmIAPEWPETWQTVANVRISQERTEEAREALRRSLGLWTHLPPEDPGVPPFPSRVSLVRLLIEVDmEEEALEVTERLIAEDDLSVEVWYLGGYARYRLGEKEREASGQASEPEAWKDTWRSSRKWLRQCLKVFEAEEYEDERLGEHAKELIASIIGEL 361
                                    36        46        56        66        76        86        96       106       116       126       136       146|      156       166       176      |186       196       206       216       226       236       246       256       266  |    276       286       296       306       316       326       336       346       356     
                                                                                                                                                  147-MSE                             183-MSE               205-MSE                                                         269-MSE                                                                                        

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TQB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TQB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TQB)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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    Val A:149 - Pro A:150   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G0S0I4_CHATD | G0S0I44ynv 4ynw
        G0SFC3_CHATD | G0SFC35tqc

(-) Related Entries Specified in the PDB File

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