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Description

Title :   CRYSTAL STRUCTURE OF AN EXONUCLEASE RESISTANT RNA FROM ZIKA VIRUS

Authors :   B. M. Akiyama, H. M. Laurence, A. R. Massey, D. A. Costantino, X. Xie, Y. Y Y. Shi, J. C. Nix, J. D. Beckham, J. S. Kieft

Date :   21 Oct 16 (Deposition) - 14 Dec 16 (Release) - 04 Jan 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.81

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Zika Rna Exonuclease Resistance, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. M. Akiyama, H. M. Laurence, A. R. Massey, D. A. Costantino, X. Xie, Y. Yang, P. Y. Shi, J. C. Nix, J. D. Beckham, J. S. Kieft
Zika Virus Produces Noncoding Rnas Using A Multi-Pseudoknot Structure That Confounds A Cellular Exonuclease.
Science V. 354 1148 2016
PubMed-ID: 27934765 | Reference-DOI: 10.1126/SCIENCE.AAH3963

Compounds

Molecule 1 - RNA (71-MER)
	Chains	:	A
	Engineered	:	YES
	Organism Scientific	:	ZIKA VIRUS
	Organism Taxid	:	64320
	Other Details	:	MR766-NIID
	Synthetic	:	YES

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	HEZ	1	Ligand/Ion	HEXANE-1,6-DIOL
2	MG	1	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	HEZ	4	Ligand/Ion	HEXANE-1,6-DIOL
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	C A:5 , A A:6 , C A:23	binding site for residue MG A 101
2	AC2	SOFTWARE	A A:36 , A A:53 , C A:54	binding site for residue HEZ A 102

SS Bonds (0, 0)

(no "SS Bond" information available for 5TPY)

Cis Peptide Bonds (0, 0)

(no "Cis Peptide Bond" information available for 5TPY)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 5TPY)

PROSITE Motifs (0, 0)

(no "PROSITE Motif" information available for 5TPY)

Exons (0, 0)

(no "Exon" information available for 5TPY)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:RNA  Length:71
                                                                                                      
                  5tpy A  1 GGGUCAGGCCGGCGAAAGUCGCCACAGUUUGGGGAAAGCUGUGCAGCCUGUAACCCCCCCACGAAAGUGGG 71
                                    10        20        30        40        50        60        70

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

(no "SCOP Domain" information available for 5TPY)

CATH Domains (0, 0)

(no "CATH Domain" information available for 5TPY)

Pfam Domains (0, 0)

(no "Pfam Domain" information available for 5TPY)

Gene Ontology (0, 0)

Asymmetric Unit(hide GO term definitions)

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		AC2	[ RasMol ]	+environment [ RasMol ]

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Biological Unit
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Still Images

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