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(-) Description

Title :  TRANSMEMBRANE PROTEIN 24 SMP DOMAIN
 
Authors :  J. A. Lees, K. M. Reinisch
Date :  17 Oct 16  (Deposition) - 01 Mar 17  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.96
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  F  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Biol. Unit 4:  C  (1x)
Biol. Unit 5:  D  (1x)
Biol. Unit 6:  E  (1x)
Biol. Unit 7:  A,B,C,D,E,F  (1x)
Keywords :  Lipid Transfer Protein, Smp, Membrane Contact Sites, Lipid Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Lees, M. Messa, E. W. Sun, H. Wheeler, F. Torta, M. R. Wenk, P. De Camilli, K. M. Reinisch
Lipid Transport By Tmem24 At Er-Plasma Membrane Contacts Regulates Pulsatile Insulin Secretion.
Science V. 355 2017
PubMed-ID: 28209843  |  Reference-DOI: 10.1126/SCIENCE.AAH6171

(-) Compounds

Molecule 1 - TRANSMEMBRANE PROTEIN 24
    Chains: F, A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: C2CD2L, KIAA0285, TMEM24, DLNB23
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: C2 DOMAIN-CONTAINING PROTEIN 2-LIKE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x):      F
Biological Unit 2 (1x): A     
Biological Unit 3 (1x):  B    
Biological Unit 4 (1x):   C   
Biological Unit 5 (1x):    D  
Biological Unit 6 (1x):     E 
Biological Unit 7 (1x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5TOD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TOD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TOD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TOD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TOD)

(-) Exons   (0, 0)

(no "Exon" information available for 5TOD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.eee.........eeeeeeeeeeee...eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee...eeeeeeee......eeeeee...hhhhhhhhhhhhhhh..eeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tod A  89 LASLFAFKSFRENWQRAWVRALNEQACIQIAFEEVPQLPPRASISHVTCVDQSEHTmVLRCQLSAEEVRFPVSVTQQSPAAVSmETYHVTLTLPPTQLEVNLEEIPGEGLLISWAFTDRPDLSLTVLPKLELSTIEELIKDAIVSTQPAmmV 255
                                    98       108      |123       133       143      |153       163       173   |   183       193       203       213       223|      243       253| 
                                                    115|                          150-MSE                    177-MSE                                       223|                253-MSE
                                                     121                                                                                                    234                 254-MSE


Chain B from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.eee.........eeeeeeeeeeee...eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee...eeeeeeee......eeeeee...hhhhhhhhhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tod B  89 LASLFAFKSFRENWQRAWVRALNEQACIQIAFEEVPQLPPRASISHVTCVDQSEHTmVLRCQLSAEEVRFPVSVTQQSPAAVSmETYHVTLTLPPTQLEVNLEEIPGEGLLISWAFTDRPDLSLTVLPKLELSTIEELIKDAIVSTQPAmmV 255
                                    98       108      |123       133       143      |153       163       173   |   183       193       203       213       223|      243       253| 
                                                    115|                          150-MSE                    177-MSE                                       223|                253-MSE
                                                     121                                                                                                    234                 254-MSE


Chain C from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.eee........eeeeeeeeeeee...eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee...eeeeeeee......eeeeee...hhhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tod C  97 SFRENWQRAWVRALNEQACQIAFEEVPQLPPRASISHVTCVDQSEHTmVLRCQLSAEEVRFPVSVTQQSPAAVSmETYHVTLTLPPTQLEVNLEEIPGEGLLISWAFTDRPDLSLTVLPKLELSTIEELIKDAIVSTQPAmmVN 256
                                   106       122       132       142       152       162       172    |  182       192       202       212       222||     242       252||  
                                            115|                         150-MSE                    177-MSE                                       223|                253-MSE
                                             122                                                                                                   234                 254-MSE


Chain D from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhh..eeeee........eeeeeeeeeeee...eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee...eeeeeeee......eeeeee...hhhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tod D  89 LASLFAFKSFRENWQRAWVRALNEQACRNGSIQIAFEEVPQLPPRASISHVTCVDQSEHTmVLRCQLSAEEVRFPVSVTQQSPAAVSmETYHVTLTLPPTQLEVNLEEIPGEGLLISWAFTDRPDLSLTVLPKLELSTIEELIKDAIVSTQPAmmVN 256
                                    98       108       118|      129       139       149|      159       169       179       189       199       209       219   ||  239       249   ||  
                                                       118|                           150-MSE                    177-MSE                                       223|                253-MSE
                                                        120                                                                                                     234                 254-MSE


Chain E from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..eee.........eeeeeeeeeeee...eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee...eeeeeeee......eeeeee...hhhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tod E  90 ASLFFKSFRENWQRAWVRALNEQACRIQIAFEEVPQLPPRASISHVTCVDQSEHTmVLRCQLSAEEVRFPVSVTQQSPAAVSmETYHVTLTLPPTQLEVNLEEIPGEGLLISWAFTDRPDLSLTVLPKLELSTIEELIKDAIVSTQPAmmVN 256
                               ||  100       110     ||124       134       144     | 154       164       174  |    184       194       204       214       234       244       254  
                              93|                  116|                          150-MSE                    177-MSE                                       223|                253-MSE
                               95                   121                                                                                                    234                 254-MSE


Chain F from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh.eeee......eeeeeeeeeeee...eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee...eeeeeeee........eeee...hhhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tod F  90 ASLFAFKSFRENWQRAWVRALNEQACIQIAFEEVLPPRASISHVTCVDQSEHTmVLRCQLSAEEVRFPVSVTQQSPAAVSmETYHVTLTLPPTQLEVNLEEIPGEGLLISWAFTDRPDLSLTVLPKLELSTIEELIKDAIVSTQPAmmVN 256
                                    99       109     ||124   ||  136       146   |   156       166       176|      186       196       206       216      |236       246      |256
                                                   115|    128|                150-MSE                    177-MSE                                       223|                253-MSE
                                                    121     131                                                                                          234                 254-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (7, 7)

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