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(-) Description

Title :  COMPLEX OF E. COLI THYMIDYLATE KINASE WITH THE BISUBSTRATE INHIBITOR AZTP5A
 
Authors :  A. Lavie, N. Ostermann, I. Schlichting
Date :  01 Sep 98  (Deposition) - 25 Nov 98  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (6x)
Biol. Unit 3:  A  (2x)
Keywords :  Atp:Dtmp Phosphotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Lavie, N. Ostermann, R. Brundiers, R. S. Goody, J. Reinstein, M. Konrad, I. Schlichting
Structural Basis For Efficient Phosphorylation Of 3'-Azidothymidine Monophosphate By Escherichia Coli Thymidylate Kinase.
Proc. Natl. Acad. Sci. Usa V. 95 14045 1998
PubMed-ID: 9826650  |  Reference-DOI: 10.1073/PNAS.95.24.14045

(-) Compounds

Molecule 1 - PROTEIN (THYMIDYLATE KINASE)
    Chains: A
    EC Number: 2.7.4.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (6x): A
Biological Unit 3 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1Z5A1Ligand/IonP1-(5'-ADENOSYL)P5-(5'-(3'AZIDO-3'-DEOXYTHYMIDYL))PENTAPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1Z5A1Ligand/IonP1-(5'-ADENOSYL)P5-(5'-(3'AZIDO-3'-DEOXYTHYMIDYL))PENTAPHOSPHATE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1Z5A6Ligand/IonP1-(5'-ADENOSYL)P5-(5'-(3'AZIDO-3'-DEOXYTHYMIDYL))PENTAPHOSPHATE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1Z5A2Ligand/IonP1-(5'-ADENOSYL)P5-(5'-(3'AZIDO-3'-DEOXYTHYMIDYL))PENTAPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:12 , GLY A:13 , ALA A:14 , GLY A:15 , LYS A:16 , THR A:17 , ARG A:20 , ASN A:21 , GLU A:25 , GLU A:40 , ARG A:51 , PHE A:74 , ARG A:78 , ASP A:99 , ARG A:100 , SER A:104 , THR A:105 , TYR A:108 , GLN A:109 , ARG A:149 , ARG A:153 , ASP A:157 , ILE A:159 , GLU A:160 , PHE A:167 , HOH A:1008 , HOH A:1015 , HOH A:1016 , HOH A:1017 , HOH A:1022 , HOH A:1023 , HOH A:1028BINDING SITE FOR RESIDUE Z5A A 214

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TMP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:40 -Pro A:41

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TMP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TMP)

(-) Exons   (0, 0)

(no "Exon" information available for 5TMP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d5tmpa_ A: Thymidylate kinase                                                                                                                                                                                      SCOP domains
               CATH domains 5tmpA00 A:2-211 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.hhhhhhh..eeeee..hhhhhhh........hhhhhhhhhhhh......eeeeee..hhhhhhhhhhh..........hhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tmp A   2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKEL 211
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TMP)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        KTHY_ECOLI | P0A720: 1e9f 4tmk

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