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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE ISG15
 
Authors :  O. O. Goodwin, J. V. Dzimianski, C. M. Daczkowski, S. D. Pegan
Date :  10 Oct 16  (Deposition) - 03 May 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.24
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Keywords :  Isg15, Ub, Mouse, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Daczkowski, J. V. Dzimianski, J. R. Clasman, O. Goodwin, A. D. Mesecar, S. D. Pegan
Structural Insights Into The Interaction Of Coronavirus Papain-Like Proteases And Interferon-Stimulated Gene Produc 15 From Different Species.
J. Mol. Biol. V. 429 1661 2017
PubMed-ID: 28438633  |  Reference-DOI: 10.1016/J.JMB.2017.04.011

(-) Compounds

Molecule 1 - UBIQUITIN-LIKE PROTEIN ISG15
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-150
    Gene: ISG15, G1P2, UCRP
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: INTERFERON-INDUCED 15 KDA PROTEIN,INTERFERON-INDUCED 17 KDA PROTEIN,IP17,UBIQUITIN CROSS-REACTIVE PROTEIN

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): A         
Biological Unit 2 (1x):  B        
Biological Unit 3 (1x):   C       
Biological Unit 4 (1x):    D      
Biological Unit 5 (1x):     E     
Biological Unit 6 (1x):      F    
Biological Unit 7 (1x):       G   
Biological Unit 8 (1x):        H  
Biological Unit 9 (1x):         I 
Biological Unit 10 (1x):          J

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5TLA)

(-) Sites  (0, 0)

(no "Site" information available for 5TLA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TLA)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu B:10 -Gly B:11
2Gly C:11 -Gly C:12
3Leu D:10 -Gly D:11
4Gly D:11 -Gly D:12
5Pro G:65 -Ser G:66
6His I:47 -Gln I:48

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TLA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TLA)

(-) Exons   (0, 0)

(no "Exon" information available for 5TLA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...eeeeeee....hhhhhhhhhhhhh..hhh.eeeee..ee.....hhhhhh.....eeeeee......eeeeee......eeeee....hhhhhhhhhhhhhh.hhhhheeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tla A   0 HMAWDLKVKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149 


Chain B from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee...eeeeeeee...hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee......eeeeee......eeeee....hhhhhhhhhhhhh..hhhhheeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tla B   0 HMAWDLKVKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149 


Chain C from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...eeeeeee....hhhhhhhhhhhhh..hhh.eeeee..ee................eeeeee......eeeeee.....eeeeee....hhhhhhhhhhhhh..hhhhheeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tla C   1 MAWDLKVKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150


Chain D from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...eeeeee..hhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee......eeeeee.....eeeeee....hhhhhhhhhhhhh..hhhhheeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tla D   3 WDLKVKMLGGNDFLVSVTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                    12      ||26        36        46        56        66        76        86        96       106       116       126       136       146    
                                           19|                                                                                                                              
                                            24                                                                                                                              


Chain E from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee.....eee......hhhhhhhhhhhhh..hhh.eeeee..ee................eeeeee......eeeeee.......eeee....hhhhhhhhhhhhh..hhhhheeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tla E   1 MAWDLKVKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150


Chain F from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....eeeee....hhhhhhhhhhhhh..hhh.eeeee..ee................eeeeee......eeeeee.....eeeeee....hhhhhhhhhhhhh..hhhhheeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tla F   0 HMAWDLKVKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149 


Chain G from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....eee..hhhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh....eeeee......eeeeee......eeeee....hhhhhhhhhhhhh.......eeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tla G   2 AWDLKVKMLGGNDFLVSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGPSSTVMLVVQNSSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                    11      ||25        35        45        55      ||67        77        87        97       107       117       127       137       147   
                                           18|                                     62|                                                                                     
                                            23                                      65                                                                                     


Chain H from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...eeeeee.....hhhhhhhhhhhhh..............................eeee........eeeeee..eeee....hhhhhhhhhhhhh..hhhhheeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tla H   3 WDLKVKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEPLSILVRNNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                    12        22        32        42||      53        63        73        83  ||    98       108       118       128       138       148  
                                                                   43|                                       86|                                                          
                                                                    45                                        92                                                          


Chain I from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeee..hhhhhhhhhhhh..hhh.eeee...............eeeeee......eeeeee......eeeee....hhhhhhhhhhhhh..hhhhheeee..ee.....hhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tla I   3 WDLKVKMLDFLVSVTVSELKKQIAQKIGVPAFQQRLAHQLQDLSSLGLGPSSTVMLVVQNSSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                   |15   ||   29        39        52 ||     65        75        85        95       105       115       125       135       145     
                                  10|   19|                      48| ||                                                                                            
                                   14    24                       52 ||                                                                                            
                                                                    54|                                                                                            
                                                                     58                                                                                            


Chain J from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee....eeeeee....hhhhhhhhhhhhh..hhh.eeeee..ee.....hhhhhh.....eeeeee......eeee...eeee....hhhhhhhhhhh....eeee..ee.....hhhhhh.......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tla J   0 HMAWDLKVKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNSSEPLSILVSNIYEVFLTQTVDTLKKKVSQEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHL 150
                                     9        19        29        39        49        59        69        79    ||  95       105     ||120       130       140       150
                                                                                                               84|                 111|                                 
                                                                                                                91                  117
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TLA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TLA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TLA)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly C:11 - Gly C:12   [ RasMol ]  
    Gly D:11 - Gly D:12   [ RasMol ]  
    His I:47 - Gln I:48   [ RasMol ]  
    Leu B:10 - Gly B:11   [ RasMol ]  
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  5tla
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  ISG15_MOUSE | Q64339
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ISG15_MOUSE | Q64339: 5chf 5chv 5chw 5jze 5tl7

(-) Related Entries Specified in the PDB File

5tl6 5tl7