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(-) Description

Title :  JOINT X-RAY/NEUTRON STRUCTURE OF HIV-1 PROTEASE TRIPLE MUTANT (V32I, I47V,V82I) WITH AMPRENAVIR AT PH 6.0
 
Authors :  A. Y. Kovalevsky, O. O. Gerlits
Date :  07 Sep 16  (Deposition) - 01 Mar 17  (Release) - 22 Mar 17  (Revision)
Method :  NEUTRON DIFFRACTION; X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Keywords :  Aspartic Protease Drug Resistant Mutant Amprenavir, Hydrolase- Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Gerlits, D. A. Keen, M. P. Blakeley, J. M. Louis, I. T. Weber, A. Kovalevsky
Room Temperature Neutron Crystallography Of Drug Resistant Hiv-1 Protease Uncovers Limitations Of X-Ray Structural Analysis At 100 K.
J. Med. Chem. V. 60 2018 2017
PubMed-ID: 28195728  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01767
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: POL
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 125)

Asymmetric Unit (2, 125)
No.NameCountTypeFull Name
14781Ligand/Ion{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YLESTER
2DOD124Ligand/Ion
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
14781Ligand/Ion{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YLESTER
2DOD-1Ligand/Ion

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:25 , GLY A:27 , ASP A:29 , ASP A:30 , ILE A:32 , GLY A:48 , GLY A:49 , ILE A:50 , ASP B:125 , GLY B:127 , ALA B:128 , ASP B:130 , ILE B:132 , VAL B:147 , GLY B:148 , GLY B:149 , ILE B:150 , ILE B:182 , DOD B:509 , DOD B:516binding site for residue 478 B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T8H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T8H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T8H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T8H)

(-) Exons   (0, 0)

(no "Exon" information available for 5T8H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee.......ee.........eeeeeee..eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhh....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 5t8h A   1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMVGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPTPINIIGRNLLTQIGATLNF  99
                                    10        20        30        40        50        60        70        80        90         


Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee......eee.........eeeeeee..eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhh....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 5t8h B 101 PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMVGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPTPINIIGRNLLTQIGATLNF 199
                                   110       120       130       140       150       160       170       180       190
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T8H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T8H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T8H)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  5t8h
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  Q7SSI0_9HIV1 | Q7SSI0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q7SSI0_9HIV1 | Q7SSI0: 3ndu 3ndw 3ndx
UniProtKB/TrEMBL
        Q7SSI0_9HIV1 | Q7SSI0: 2avo 2g69 2hb3 2hs1 2hs2 2i4u 2idw 2ieo 2nmy 2nmz 2nnk 2nnp 3b7v 3b80 3oxc 3s53 3s54 3s56 4kb9 5e5j

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5T8H)