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(-) Description

Title :  STRUCTURE OF THE MIND COMPLEX SHOWS A REGULATORY FOCUS OF YEAST KINETOCHORE ASSEMBLY
 
Authors :  R. Valverde, S. Jenni, Y. Dimitrova, Y. Khin, S. C. Harrison
Date :  01 Sep 16  (Deposition) - 09 Nov 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Cell Cycle, Kinetochore, Complex, Chromosome, Segregation, Mind, Mis12, Mtw1, Spc24, Spc25, Ndc80, Nuf2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. N. Dimitrova, S. Jenni, R. Valverde, Y. Khin, S. C. Harrison
Structure Of The Mind Complex Defines A Regulatory Focus Fo Yeast Kinetochore Assembly.
Cell V. 167 1014 2016
PubMed-ID: 27881300  |  Reference-DOI: 10.1016/J.CELL.2016.10.011

(-) Compounds

Molecule 1 - KINETOCHORE PROTEIN SPC24
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SPC24, YMR117C, YM9718.16C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 2 - KINETOCHORE PROTEIN SPC25
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SPC25, YER018C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Other Details: RESIDUES S130, N131, A132 ARE LEFT OVER FROM THE TEV PROTEASE CLEAVAGE SITE.
    Strain: ATCC 204508 / S288C
 
Molecule 3 - KINETOCHORE-ASSOCIATED PROTEIN DSN1
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DSN1, YIR010W, YIB10W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5T6J)

(-) Sites  (0, 0)

(no "Site" information available for 5T6J)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T6J)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T6J)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:59
                                                                                           
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeehhh.eeee........eeee.....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                 5t6j A 155 ANENILKLKLYRSLGVILDLENDQVLINRKNDGNIDILPLDNNLSDFYKTKYIWERLGK 213
                                   164       174       184       194       204         


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhheeeee.......eeeee.....eeeee.......eeee....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 5t6j B 130 SNANDAAEVALYERLLQLRVLPGASDVHDVRFVFGDDSRCWIEVAMHGDHVIGNSHPALDPKSRATLEHVLTVQGDLAAFLVVARDMLLASL 221
                                   139       149       159       169       179       189       199       209       219  


Chain C from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 5t6j C 560 QQLLKGLSLSFS 571
                                   569
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T6J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T6J)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (20, 43)

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  SPC25_YEAST | P40014
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPC24_YEAST | Q04477: 2ftx 2fv4 4geq 5tcs 5td8
        SPC25_YEAST | P40014: 2ftx 2fv4 4geq 5tcs 5td8

(-) Related Entries Specified in the PDB File

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