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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN EIF4E-EIF4G COMPLEX
 
Authors :  S. Gruener, D. Peter, R. Weber, L. Wohlbold, M. -Y. Chung, O. Weichenrie E. Valkov, C. Igreja, E. Izaurralde
Date :  29 Aug 16  (Deposition) - 26 Oct 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Translation, Gene Regulation, Cap Binding Protein, 4E-Binding Protein, Translation Initiation, Eif4F (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Gruner, D. Peter, R. Weber, L. Wohlbold, M. Y. Chung, O. Weichenrieder, E. Valkov, C. Igreja, E. Izaurralde
The Structures Of Eif4E-Eif4G Complexes Reveal An Extended Interface To Regulate Translation Initiation.
Mol. Cell V. 64 467 2016
PubMed-ID: 27773676  |  Reference-DOI: 10.1016/J.MOLCEL.2016.09.020

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
    ChainsA, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPETMCN
    Expression System Taxid469008
    Expression System VariantSTAR
    Expression System Vector TypePLASMID
    GeneEIF4E, EIF4EL1, EIF4F
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymEIF4E,EIF-4F 25 KDA SUBUNIT,MRNA CAP-BINDING PROTEIN
 
Molecule 2 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPETMCN
    Expression System Taxid469008
    Expression System VariantSTAR
    Expression System Vector TypePLASMID
    GeneEIF4G1, EIF4F, EIF4G, EIF4GI
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymEIF-4G1,P220

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MGP2Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:56 , MET A:101 , TRP A:102 , GLU A:103 , ARG A:157 , LYS A:162 , LYS A:206 , HOH A:408 , HOH A:420 , HOH A:431 , HOH A:442 , HOH A:462 , HOH A:482 , GLU B:608binding site for residue MGP A 301
2AC2SOFTWAREARG A:128 , PHE A:129 , GLU A:132 , ARG A:186 , LEU A:187 , ARG B:614binding site for residue GOL A 302
3AC3SOFTWAREGLU A:174 , HOH A:417binding site for residue GOL A 303
4AC4SOFTWARETRP C:56 , MET C:101 , TRP C:102 , GLU C:103 , ARG C:157 , LYS C:162 , HOH C:402 , HOH C:421 , HOH C:428 , HOH C:432binding site for residue MGP C 301
5AC5SOFTWARETYR C:76 , ARG C:128 , HOH C:497 , HOH C:525binding site for residue GOL C 302
6AC6SOFTWAREARG C:128 , GLU C:132 , ARG C:186 , LEU C:187 , GLY C:188 , ARG D:614binding site for residue GOL C 303
7AC7SOFTWARELYS C:184binding site for residue GOL C 304
8AC8SOFTWARELYS C:54 , ASN C:59 , HOH C:463 , GLU D:608binding site for residue GOL C 305
9AC9SOFTWARELYS A:54 , ALA A:58 , ARG A:61 , HOH A:447 , LEU C:39 , GLN C:40 , HOH C:417 , LYS D:610binding site for residue GOL C 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T46)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T46)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T46)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T46)

(-) Exons   (0, 0)

(no "Exon" information available for 5T46)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeee...........eeeeeeeeehhhhhhhhh............eeeeee...............eeeeee....hhhh.hhhhhhhhhhhhh..........eeeeeee......eeeeee.....hhhhhhhhhhhhhhh........eeeehhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t46 A  31 PEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATK 206
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      

Chain B from PDB  Type:PROTEIN  Length:35
                                                                   
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                 5t46 B 608 EKKRYDREFLLGFQFIFASMQKPEGLPHISDVVLD 642
                                   617       627       637     

Chain C from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee.......hhhheeeeeeeeehhhhhhhhh............eeeeee...............eeeeee....hhhh.hhhhhhhhhhhhh..........eeeeeee......eeeeee.....hhhhhhhhhhhhhhh........eeeehhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t46 C  30 NPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATK 206
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       

Chain D from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 5t46 D 607 EEKKRYDREFLLGFQFIFASMQKPEGLPHISDVVLD 642
                                   616       626       636      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T46)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T46)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T46)

(-) Gene Ontology  (39, 51)

Asymmetric Unit(hide GO term definitions)

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  IF4G1_HUMAN | Q04637
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IF4E_HUMAN | P067301ipb 1ipc 1wkw 2gpq 2v8w 2v8x 2v8y 2w97 3am7 3tf2 3u7x 4aza 4bea 4dt6 4dum 4tpw 4tqb 4tqc 4ued 5ehc 5ei3 5eir 5ekv 5gw6
        IF4G1_HUMAN | Q046371lj2 1ug3 2w97 4aza 4f02 5ehc 5ei3 5eir

(-) Related Entries Specified in the PDB File

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