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(-) Description

Title :  ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE TARGETING THE ANOPHELES AGAP011377 GENE; HARBORS 53 POINT MUTATIONS RELATIVE TO WILD-TYPE I-ONUI
 
Authors :  B. L. Stoddard, R. Werther
Date :  23 Aug 16  (Deposition) - 03 May 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Meganuclease, Engineered Protein, Dna Complex, Homing Endonuclease, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. L. Stoddard, R. Werther
Tbd
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - I-ONUI_E-AG011377
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)RIL
    Expression System Taxid: 469008
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
 
Molecule 2 - DNA (26-MER)
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - DNA (26-MER)
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:21 , GLU A:178 , DC B:14 , DT C:16 , HOH C:103binding site for residue CA A 401
2AC2SOFTWAREGLU A:22 , GLY A:177 , DT B:15 , DA C:15binding site for residue CA A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T2O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T2O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T2O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T2O)

(-) Exons   (0, 0)

(no "Exon" information available for 5T2O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.eeeeeeeeee....eeeeeeeeeeeee..hhhhhhhhhhhhh..eeeeee..eeeeee.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh................hhhhhhhhhhhhh.eeeee.......eeeeeeeeee..hhhhhhhhhhhh...eeeeeee..eeeeeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t2o A   8 ESINPWILTGFADAEGSFSLYIRNTNDRPSRYETRLTFAIGLHYKDKSILENIQSTWKVGIITNAGNNVVQLRVSRFEDLKVIIDHFEKYPLITQKLGDYKLFKQAFSVMENKEHLKENGIKELVRIKAKMNWGLNDELKKAFPENISKERPLINKNIPNLKWLAGFTSGEGYFGVILAKAATVQVRLRFEIGQHIRDKNLMNSLITYLGCGHIYEKNKSGRSWLVYTVTKFSDISDKIIPVFQKNTLIGVKLEDFEDWCKVAKLIEEKKHLTESGLDEIKKIKLNMNKGRVF 303
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187|      200       210       220       230       240       250       260       270       280       290       300   
                                                                                                                                                                                                             187|                                                                                                                
                                                                                                                                                                                                              191                                                                                                                


Chain B from PDB  Type:DNA  Length:26
                                                          
                 5t2o B  -1 GGGGCCGGAAAATTTCTACGTCTGCG  24
                                     8        18      


Chain C from PDB  Type:DNA  Length:26
                                                          
                 5t2o C   1 CCGCAGACGTAGAAATTTTCCGGCCC  26
                                    10        20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T2O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T2O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T2O)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  5t2o
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 Related Entries

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(-) Related Entries Specified in the PDB File

5t2h 5t2j 5t2n