5T09 - JenaLib

Title :   THE STRUCTURE OF THE TYPE III EFFECTOR HOPBA1

Authors :   K. Cherkis, M. Machius, M. T. Nishimura, J. L. Dangl

Date :   15 Aug 16 (Deposition) - 01 Feb 17 (Release) - 22 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.01

Chains :   Asym./Biol. Unit : A

Keywords :   Alpha-Beta Fold, Parallel Beta Core, Erea/Chan-Like, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. T. Nishimura, R. G. Anderson, K. A. Cherkis, T. F. Law, Q. L. Liu, M. Machius, Z. L. Nimchuk, L. Yang, E. H. Chung, F. El Kasmi, M. Hyunh, E. Osborne Nishimura, J. E. Sondek, J. L. Dangl
Tir-Only Protein Rba1 Recognizes A Pathogen Effector To Regulate Cell Death In Arabidopsis.
Proc. Natl. Acad. Sci. V. 114 E2053 2017 U. S. A.
PubMed-ID: 28137883 | Reference-DOI: 10.1073/PNAS.1620973114

Compounds

Molecule 1 - TYPE III SECRETION SYSTEM EFFECTOR HOPBA1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3) ROSETTA
	Expression System Taxid	:	469008
	Gene	:	ALO85_00915
	Organism Scientific	:	PSEUDOMONAS SYRINGAE PV. APTATA
	Organism Taxid	:	83167

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Asymmetric/Biological Unit (3, 9)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	K	1	Ligand/Ion	POTASSIUM ION
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:200 , PRO A:202 , MSE A:205	binding site for residue K A 301
2	AC2	SOFTWARE	LYS A:101 , ASP A:227	binding site for residue CL A 302
3	AC3	SOFTWARE	HIS A:87 , HOH A:412	binding site for residue CL A 303
4	AC4	SOFTWARE	ARG A:162 , HIS A:193	binding site for residue CL A 305

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh.............eeeeee.......ee........eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t09 A  23 INPSINVRPPRGGPVDTLVGAASDNNLVYIGDEHGKLFIPKLITESAAKLKNAGVDHLAVEFVKHSDGAAFREALSDGKSAVKHFLEASWGRHGDAWLDKVSEALCSAHRAGIYVSGIDRKmAIDQPKTPmQKILYmKKRLALNVAWDAAATREASAVCANKSIVWGGAGHFSNSKTDGPKDmRPGLVISFDLTGRGSSRINDADEHSHIVIAGEDN 239
                                    32        42        52        62        72        82        92       102       112       122       132       142 |     152|     |162       172       182       192       202  |    212       222       232       
                                                                                                                                                   144-MSE  153-MSE |                                           205-MSE                              
                                                                                                                                                                  159-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description