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(-) Description

Title :  RIBOSOME ASSEMBLY FACTOR NSA1: C-TERMINAL TRUNCATION
 
Authors :  Y. H. Lo, R. E. Stanley
Date :  03 Aug 16  (Deposition) - 26 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Ribosome Assembly, Rrna Processing, Atpases Associated With Diverse Cellular Activities (Aaa), Wd40 Domain, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. H. Lo, R. E. Stanley
Ribosome Assembly Factor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBOSOME BIOGENESIS PROTEIN NSA1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NSA1, YGL111W, G2990
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NOP7-ASSOCIATED PROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5SUI)

(-) Sites  (0, 0)

(no "Site" information available for 5SUI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5SUI)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:4 -Ser A:5
2Lys A:127 -Leu A:128
3Ile A:151 -Lys A:152
4Ala A:190 -Pro A:191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5SUI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5SUI)

(-) Exons   (0, 0)

(no "Exon" information available for 5SUI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhheeeeeee...ee..........eeeee...hhhh.eeeeeeee..eeeeee...eeeeeeeeeee...eeeeeeeeeeeee.............eeeeee......eeeeee...eeeeeee.....eeeeeeee......eeee..........eeeeeee..eeeeeeee......eeeeee................eeeeeee..............eeeeee...eeeeee........eeee.hhhhh.eeeeee..................hhhh.eeeeee....eeeee....eeee...........eeeee...eeeee....eeeeee.....eeeeee....eeeeee.....ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5sui A   4 GSMRLLVSCVDSGSIKEVLCNIGTDTSVQSALQPFHVAPHLAEGLKAYVDRMWVISEDEAILARNSGVVELVKISKHLKEPKFDISEFEITSSVSDLFDDAKLLVDGFVTLCPIKKSNNTFVAATKSGLLHIIKKGEDKKLIKLASLGLKAPVEFLQLYDLEDTDTDKYIFAYGGEENLIKLVEIDSSFQSLKQIWEAKNVKNDRLDMRVPVWPMALRFLEPSPGKTEKGKLNYQFAAITRWSHLTKYSTQHGRKPFAQIDLLPNREPLSQMEVFDAKGENVVSSLGNFQSETFNELNVITTDYKKNVFKFDGNGRMLGKVGRDDITGSSTYIHVHDGKYLLQGGLDRYVRIFDIKTNKMLVKVYVGSRINFIVMLDDVEIE 421
                                    13        23        33        43        53        63        73        83|      115       125  ||   147     ||159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419  
                                                                                                          83|                   128|         153|                                                                                                                                                                                                                                                                         
                                                                                                          106                    141          156
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5SUI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5SUI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5SUI)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Ala A:190 - Pro A:191   [ RasMol ]  
    Gly A:4 - Ser A:5   [ RasMol ]  
    Ile A:151 - Lys A:152   [ RasMol ]  
    Lys A:127 - Leu A:128   [ RasMol ]  
 

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  NSA1_YEAST | P53136
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NSA1_YEAST | P53136: 5sum

(-) Related Entries Specified in the PDB File

5sum