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(-) Description

Title :  CRYSTAL STRUCTURE OF WNK3 KINASE DOMAIN IN A DIPHOSPHORYLATED STATE AND IN A COMPLEX WITH THE INHIBITOR PP-121
 
Authors :  D. M. Pinkas, J. C. Bufton, J. A. Newman, O. Borkowska, R. Chalk, N. A. Bur Brown, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bu Structural Genomics Consortium (Sgc)
Date :  19 May 17  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Wnk3, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Pinkas, G. M. Daubner, J. C. Bufton, S. G. Bartual, C. E. Sanvitale D. R. Alessi, A. Bullock
Crystal Structure Of Wnk3 Kinase Domain In A Diphosphorylated State And In A Complex With The Inhibitor Pp-121
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE WNK3
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 132-414
    Gene: WNK3, KIAA1566, PRKWNK3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN KINASE LYSINE-DEFICIENT 3,PROTEIN KINASE WITH NO LYSINE 3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
19HE2Ligand/Ion1-CYCLOPENTYL-3-(1~{H}-PYRROLO[2,3-B]PYRIDIN-5-YL)PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2NA1Ligand/IonSODIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
19HE1Ligand/Ion1-CYCLOPENTYL-3-(1~{H}-PYRROLO[2,3-B]PYRIDIN-5-YL)PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
19HE1Ligand/Ion1-CYCLOPENTYL-3-(1~{H}-PYRROLO[2,3-B]PYRIDIN-5-YL)PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2NA-1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:159 , VAL A:161 , ALA A:174 , CYS A:176 , THR A:227 , GLU A:228 , MET A:230 , PHE A:282 , ASP A:294 , HOH A:660 , HOH A:710binding site for residue 9HE A 501
2AC2SOFTWAREASP A:150 , HOH A:614 , HOH A:673 , HOH A:688binding site for residue NA A 502
3AC3SOFTWAREGLY B:154 , LYS B:159 , VAL B:161 , ALA B:174 , CYS B:176 , THR B:227 , GLU B:228 , MET B:230 , PHE B:282 , ASP B:294 , HOH B:650 , HOH B:657binding site for residue 9HE B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5O2B)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:268 -Pro A:269
2Thr B:268 -Pro B:269

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5O2B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5O2B)

(-) Exons   (0, 0)

(no "Exon" information available for 5O2B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..ee.....eeeeeeeeee...eeeeeeee.....eeeeeee..hhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee.....hhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..............eee......eee....hhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhh..hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5o2b A 131 MEAEMKAVATSPSGRFLKFDIELGRGAFKTVYKGLDTETWVEVAWCELQLTKAEQQRFKEEAEMLKGLQHPNIVRFYDSWESIKCIVLVTELMTSGTLKTYLKRFKVMKPKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLMIGTPEFMAPEMYEEHYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRKVTSGIKPASFNKVTDPEVKEIIEGCIRQNKSERLSIRDLLNHAFFAEDTGLRVE 414
                                   140       150       160       170       183       193       203       213  ||   227       237       247       257       267       277       287       297   ||  315       325       335       345       355       365       375       385       395       405         
                                                                          179|                              216|                                                                             301|                                                                                                        
                                                                           183                               221                                                                              310                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.....eeeeeeeeeee..eeeeeeee....eeeeeeeee..hhhhhhhhhhhhhhh.........eeeeeeeee..eeeeeeeee.....hhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..............eee......eee...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhh....hhhhhhhh..........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5o2b B 135 MKAVATSPSGRFLKFDIELGRGAFKTVYKGLDTETWVEVAWCELQDTKAEQQRFKEEAEMLKGLQHPNIVRFYDSWESILKGKKCIVLVTELMTSGTLKTYLKRFKVMKPKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLMTPEFMAPEMYEEHYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRKVTSKPASFNKVTDPEVKEIIEGCIRQNKSERLSIRDLLNHAFFA 406
                                   144       154       164       174     ||187       197       207       217       227       237       247       257       267       277       287       297   ||  317       327       337       347       357     ||369       379       389       399       
                                                                       180|                                                                                                                  301|                                                363|                                        
                                                                        184                                                                                                                   312                                                 366
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5O2B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5O2B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5O2B)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        WNK3_HUMAN | Q9BYP7: 5nkp 5o1v 5o21 5o23 5o26 5o2c

(-) Related Entries Specified in the PDB File

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