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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM MYCOBACTERIUM ABCESSUS IN COMPLEX WITH 5-METHYL-1-PHENYL-PYRAZOLE-4-CARBOXYLIC ACID (FRAGMENT 1)
 
Authors :  S. E. Thomas, S. Y. Kim, V. Mendes, M. Blaszczyk, T. L. Blundell
Date :  16 May 17  (Deposition) - 28 Jun 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Coenzyme A Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Thomas, V. Mendes, S. Y. Kim, S. Malhotra, B. Ochoa-Montano, M. Blaszczyk, T. L. Blundell
Structural Biology And The Design Of New Therapeutics: From Hiv And Cancer To Mycobacterial Infections.
J. Mol. Biol. 2017
PubMed-ID: 28648615  |  Reference-DOI: 10.1016/J.JMB.2017.06.014

(-) Compounds

Molecule 1 - PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE
    Chains: A, B, C
    EC Number: 2.7.7.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: COAD, MAB_3259C
    Organism Scientific: MYCOBACTERIUM ABSCESSUS (STRAIN ATCC 19977 / DSM 44196 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543)
    Organism Taxid: 561007
    Synonym: DEPHOSPHO-COA PYROPHOSPHORYLASE,PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE,PPAT

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
19FH3Ligand/Ion5-METHYL-1-PHENYL-PYRAZOLE-4-CARBOXYLIC ACID
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
19FH6Ligand/Ion5-METHYL-1-PHENYL-PYRAZOLE-4-CARBOXYLIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:14 , GLY A:16 , HIS A:17 , ARG A:90 , THR A:118 , TYR A:122 , VAL A:125 , SER A:126 , SER A:127 , HOH A:304 , HOH A:306binding site for residue 9FH A 201
2AC2SOFTWARETHR B:14 , GLY B:16 , HIS B:17 , ARG B:90 , THR B:118 , TYR B:122 , VAL B:125 , SER B:126 , SER B:127 , HOH B:337binding site for residue 9FH B 201
3AC3SOFTWARETHR C:14 , GLY C:16 , HIS C:17 , ARG C:90 , THR C:118 , TYR C:122 , VAL C:125 , SER C:126 , SER C:127 , HOH C:303binding site for residue 9FH C 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5O0A)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asp A:11 -Pro A:12
2Asp B:11 -Pro B:12
3Asp C:11 -Pro C:12
4Thr C:91 -Gly C:92

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5O0A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5O0A)

(-) Exons   (0, 0)

(no "Exon" information available for 5O0A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.........hhhhhhhhhhhhh.....eeeeee..hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhh........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5o0a A   1 MTGAVCPGSFDPVTLGHLDVFERAAAQFDEVIVAVLINPNKAGMFTVDERIEMIRESTADLPNLRVESGQGLLVDFVRERGLNAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPAYSFVSSSLAKEVATYGGDVSALLPASVHQRLLGKLR 157
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       


Chain B from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhhhhhh.....eeeeee..hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhh........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5o0a B   1 MTGAVCPGSFDPVTLGHLDVFERAAAQFDEVIVAVLINPAGMFTVDERIEMIRESTADLPNLRVESGQGLLVDFVRERGLNAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPAYSFVSSSLAKEVATYGGDVSALLPASVHQRLLGKLR 157
                                    10        20        30        42        52        62        72        82        92       102       112       122       132       142       152     
                                                                 39|                                                                                                                   
                                                                  42                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhh.....eeeeee..hhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5o0a C   1 MTGAVCPGSFDPVTLGHLDVFERAAAQFDEVIVAVLIAGMFTVDERIEMIRESTADLPNLRVESGQGLLVDFVRERGLNAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPAYSFVSSSLAKEVATYGGDVSALLPASVHQRLLGKLR 157
                                    10        20        30      ||44        54        64        74        84        94       104       114       124       134       144       154   
                                                               37|                                                                                                                   
                                                                42
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5O0A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5O0A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5O0A)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  5o0a
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAD_MYCA9 | B1MDL6: 5o06 5o08 5o0b 5o0c 5o0d 5o0f 5o0h

(-) Related Entries Specified in the PDB File

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