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(-) Description

Title :  CRYSTAL STRUCTURE OF DNA CROSS-LINK REPAIR PROTEIN 1A IN COMPLEX WITH CEFTRIAXONE (ALTERNATIVE SITE)
 
Authors :  J. A. Newman, H. Aitkenhead, K. Kupinska, N. A. Burgess-Brown, R. Talon T. Krojer, F. Von Delft, C. H. Arrowsmith, A. Edwards, C. Bountra, O. G
Date :  15 May 17  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A
Keywords :  Exonulcease, Cephalosporin, Cross-Link Repair, Dclre1A, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Newman, H. Aitkenhead, K. Kupinska, N. A. Burgess-Brown, R. Talon, T. Krojer, F. Von Delft, C. H. Arrowsmith, A. Edwards, C. Bountra, O. Gileadi
Crystal Structure Of Dna Cross-Link Repair Protein 1A In Complex With Ceftriaxone (Alternative Site)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA CROSS-LINK REPAIR 1A PROTEIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: DCLRE1A, KIAA0086, SNM1, SNM1A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SNM1 HOMOLOG A,HSNM1A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
19F21Ligand/IonCEFTRIAXONE
2NI1Ligand/IonNICKEL (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:732 , HIS A:734 , HIS A:793 , ASP A:815 , HOH A:1310 , HOH A:1361 , HOH A:1383binding site for residue NI A 1101
2AC2SOFTWAREALA A:828 , GLN A:830 , LYS A:831 , HIS A:833 , ILE A:937 , ASN A:938 , PHE A:939 , ARG A:960 , THR A:962 , LYS A:981 , ILE A:986 , GLY A:988 , HOH A:1220 , HOH A:1304 , HOH A:1313 , HOH A:1333 , HOH A:1382 , HOH A:1393 , HOH A:1405 , HOH A:1406binding site for residue 9F2 A 1102

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:925 -A:949

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5NZX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NZX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NZX)

(-) Exons   (0, 0)

(no "Exon" information available for 5NZX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhh.ee....eee............eee....hhhhhh.........eeehhhhhhhhhhhh..hhh.eee......eee..eeeeeee.......eeeeee.....eeee......hhhhhhhhhhhh...eeee............hhhhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh..ee.hhhhhhhhh.....hhhh.ee.hhhhh.eeeee.hhhhhhhhhhhhhhhhhh..eeeeeee...........eee..eeeeee......hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5nzx A  699 KTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFTFPVYCSEITGNLLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMERSLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFREWKLEAGY 1040
                                   708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958      |974       984       994      1004      1014      1024      1034      
                                                                                                                                                                                                                                                                                                    965|                                                                    
                                                                                                                                                                                                                                                                                                     972
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NZX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NZX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NZX)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  5nzx
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCR1A_HUMAN | Q6PJP8: 4b87 5ahr 5nzw 5nzy

(-) Related Entries Specified in the PDB File

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