5NO8 - JenaLib

Title :   POLYSACCHARIDE LYASE BACCELL_00875

Authors :   A. Cartmell, J. Munoz-Munoz, N. Terrapon, A. Basle, B. Henrissat, H. J.

Date :   11 Apr 17 (Deposition) - 28 Jun 17 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Polysaccharide Lyase, Arabinogalactan, L-Rhamnose, Glucuronic Acid, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Munoz-Munoz, A. Cartmell, N. Terrapon, A. Basle, B. Henrissat, H. J. Gilbert
An Evolutionarily Distinct Family Of Polysaccharide Lyases Removes Rhamnose Capping Of Complex Arabinogalactan Proteins.
J. Biol. Chem. 2017
PubMed-ID: 28637865 | Reference-DOI: 10.1074/JBC.M117.794578

Compounds

Molecule 1 - BACCELL_00875
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	BACCELL_00875
	Organism Scientific	:	BACTEROIDES CELLULOSILYTICUS DSM 14838
	Organism Taxid	:	537012

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 11)

Asymmetric Unit (1, 11)

No.	Name	Count	Type	Full Name
1	GOL	11	Ligand/Ion	GLYCEROL

Biological Unit 1 (1, 6)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	GOL	5	Ligand/Ion	GLYCEROL

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:449 , ILE A:492 , GLU A:537 , GLU A:541 , SER A:543 , ARG A:593 , TRP A:595 , ASP A:596 , HOH A:829	binding site for residue GOL A 701
02	AC2	SOFTWARE	LYS A:264 , ARG A:643 , TYR A:687 , HOH A:1028 , HOH A:1044	binding site for residue GOL A 702
03	AC3	SOFTWARE	THR A:338 , ALA A:339 , TYR A:687 , LEU A:688 , ARG A:692 , HOH A:1016 , HOH B:943	binding site for residue GOL A 703
04	AC4	SOFTWARE	LYS A:404 , GLU A:456 , GLN A:550 , TYR A:624 , TYR A:686 , HOH A:995	binding site for residue GOL A 704
05	AC5	SOFTWARE	ARG A:83 , GLU A:84 , THR A:85 , HOH A:816 , LYS B:87 , GLU B:89	binding site for residue GOL A 705
06	AC6	SOFTWARE	THR A:78 , HOH A:916 , HOH A:930 , THR B:85 , TYR B:140 , GOL B:705	binding site for residue GOL A 706
07	AC7	SOFTWARE	TYR B:449 , GLU B:541 , SER B:543 , ARG B:593 , TRP B:595 , ASP B:596 , GOL B:702 , HOH B:826	binding site for residue GOL B 701
08	AC8	SOFTWARE	ASN B:385 , ASP B:388 , ARG B:445 , TRP B:599 , GOL B:701 , HOH B:909	binding site for residue GOL B 702
09	AC9	SOFTWARE	PRO B:282 , GLY B:301 , ASN B:302 , GLY B:466 , ASP B:467 , LYS B:468 , HOH B:873 , HOH B:1227	binding site for residue GOL B 703
10	AD1	SOFTWARE	LYS B:404 , GLU B:456 , GLN B:550 , TYR B:624 , TYR B:686 , HOH B:1043	binding site for residue GOL B 704
11	AD2	SOFTWARE	THR A:85 , TYR A:140 , GOL A:706 , THR B:78 , LYS B:87 , HOH B:888 , HOH B:998	binding site for residue GOL B 705

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:669
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......eeeeee.....................hhhhh...eeeeeee..eeeeeee....ee.....eeeeee..eeeeeeeeee..eeeeeeeeee.....eeeeeeeee........hhhhhhhhheeeeee.hhhh.eeeeee......eeeeeeee....eeeee......hhhhh..eeeee...eee....eeeeeeeeeee.hhhhhhhhhhhh...eeee...eee...eeeeeee........eeee..eee..eee..eeeeeee....eeeeeeeee...eeeeeeeeee.hhhhhhhhhhhhhhhhh...............ee....ee........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee...ee..ee..ee..ee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5no8 A   26 NFPVEMRINPSTGAISELTLKGDNRSMNWVVKTDGTQYPWVKDNYGWGLGYFTVVKGRETVKREWRIPVEISPDGMKVLYREGDIRILIKREIKQGDLVEEYSFTNEGEEPVSLYDVAVYTPFNDNYPDAQQCINSRAHTHIWKGGSAAYVNAIRMGDFTPHLGLVVTDGAIRNYEIWERGRKKANSQTRGIIALDLPDLLLKPGESYSLEWHVFAHNGNDDFRHKLLEKGSVLVSCNKYVFEKGEKARVECRSLEPLEACTAKMNGVPVPVKQEGNLCFVEVPMEQAGEVRFDFYYNGNKQTHADCLVISNTADLIRKRVDFIRTRQQMNNPSDLRDGAYMVYDNEGDSIYLNDTPNCNPVDRDEGAERLGMGVLLVKQYLLTKDPELKQSLLRYADFVRRKLQTDNYVTYSSVDQKNRNRGYNYMWVAELYFQMYKVTGDKQFVTDGYKTLKSMFQQFGYGFYAIGIPVRLGLQSLKEAGMKKEYTDLRNDFIKTGDVFVKNGLNYPAHEVNYEQSIVAPAIQFLAQLYLETGSQKYLDEVKRQMPVLEAFNGFQPSYHLNEVAIRHWDGHWFGKRELFGDTFPHYWSTITGAVYYYYALCTGDSSYQKRAENVVRNNLCLFFEDGKASCAYMYPYKIDGVKAEFYDPYANDQDWALVYYLLVNRGL  694
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605      |615       625       635       645       655       665       675       685         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   612A

Chain B from PDB  Type:PROTEIN  Length:669
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......eeeeee.....................hhhhh...eeeeeee..eeeeeee....ee.....eeeeee..eeeeeeeeee..eeeeeeeeee.....eeeeeeeee........hhhhhhhhheeeeee.hhhh.eeeeee......eeeeeeee....eeeee......hhhhh..eeeee...eee....eeeeeeeeeee.hhhhhhhhhhhh...eeee...eee...eeeeeee........eeee..eee..eee..eeeeeee....eeeeeeeee...eeeeeeeeee.hhhhhhhhhhhhhhhhh...............ee....ee........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhh............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.........ee...ee..ee..ee..ee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5no8 B   26 NFPVEMRINPSTGAISELTLKGDNRSMNWVVKTDGTQYPWVKDNYGWGLGYFTVVKGRETVKREWRIPVEISPDGMKVLYREGDIRILIKREIKQGDLVEEYSFTNEGEEPVSLYDVAVYTPFNDNYPDAQQCINSRAHTHIWKGGSAAYVNAIRMGDFTPHLGLVVTDGAIRNYEIWERGRKKANSQTRGIIALDLPDLLLKPGESYSLEWHVFAHNGNDDFRHKLLEKGSVLVSCNKYVFEKGEKARVECRSLEPLEACTAKMNGVPVPVKQEGNLCFVEVPMEQAGEVRFDFYYNGNKQTHADCLVISNTADLIRKRVDFIRTRQQMNNPSDLRDGAYMVYDNEGDSIYLNDTPNCNPVDRDEGAERLGMGVLLVKQYLLTKDPELKQSLLRYADFVRRKLQTDNYVTYSSVDQKNRNRGYNYMWVAELYFQMYKVTGDKQFVTDGYKTLKSMFQQFGYGFYAIGIPVRLGLQSLKEAGMKKEYTDLRNDFIKTGDVFVKNGLNYPAHEVNYEQSIVAPAIQFLAQLYLETGSQKYLDEVKRQMPVLEAFNGFQPSYHLNEVAIRHWDGHWFGKRELFGDTFPHYWSTITGAVYYYYALCTGDSSYQKRAENVVRNNLCLFFEDGKASCAYMYPYKIDGVKAEFYDPYANDQDWALVYYLLVNRGL  694
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605      |615       625       635       645       655       665       675       685         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   612A

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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