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(-) Description

Title :  CRYSTAL STRUCTURE OF UTP4 FROM CHAETOMIUM THERMOPHILUM
 
Authors :  F. R. Calvino, Y. L. Ahmed, K. Wild, I. Sinning
Date :  05 Feb 17  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ribosome Biogenesis, Ribosome, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. R. Calvino, M. Kornprobst, G. Schermann, F. Birkle, K. Wild, T. Fischer, E. Hurt, Y. L. Ahmed, I. Sinning
Structural Basis For 5'-Ets Recognition By Utp4 At The Earl Stages Of Ribosome Biogenesis.
Plos One V. 12 78752 2017
PubMed-ID: 28575120  |  Reference-DOI: 10.1371/JOURNAL.PONE.0178752

(-) Compounds

Molecule 1 - UTP4
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA 2
    Expression System Vector Type: PET24D
    Gene: CTHT_0058380
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 30)

Asymmetric Unit (1, 30)
No.NameCountTypeFull Name
1MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 15)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 15)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5N1A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5N1A)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:833 -Pro A:834
2Arg B:833 -Pro B:834

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5N1A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5N1A)

(-) Exons   (0, 0)

(no "Exon" information available for 5N1A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:703
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeeeee.........eeeeee........hhhhhhhh......eeeee....eeeeehhhhh.eeeeee.........eeeeee...ee.....ee...eeeeee....eeeeee....eeeeeee.....eeeeee.........eeeeee...eeeeee.hhhh.eeeeeeee.......eeeeee....eeeeee...eeeeee.....eeeeee.........eeee.....eeee....eeeee......eeeeee.....eeeeee......eeeee....eeeeee.......eeeeeee......eeeeeeeee..eeeeeeee.....eeee.hhh.....ee.........eeee....eeeeee..eeeeeee....eeeeeeee........eeee.....eeeee....eeeeeeeeeee.....eeeeee............ee.....eeeeee...eeeeeeeeeeee..eeeeee...eee.......hhhhhh....hhhh.eeeeee.....eeeeee....eeeeeee.....eeee..hhhhh......eeeeee...........eeeee....eeeee....eehhhhhhhhhhhh..........eeeeeee..eeeeee...eeeee.........eee.....eeeeeee.....eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n1a A -10 TTENLYFQGAHmDIHRCRFVRYPASAINAVAFTHSALPVVSSSKKYLQKNIQVRLAIGRANGDIEIWNPLNGGWYQEVIIPGGKDRSVDGLVWVTDPDEEmADGKIIHGKSRLFSIGYTTTITEWDLEKARAKKHASGQHGEIWCFGVQPLPAAQNRKLVAGTVDGNLVLYSIEDGDLKFQKTLTRTPSKKTKFVSIAFQSHNIVIVGCSNSTICAYDVRTGTmLRQmTLGSKNIIVWAVKCLPNGDIVSGDSTGQVCIWDGKTYTQAQRIQSHTQDVLCLSVSADGSKIISGGmDRRTAVYEPmAGQSGRWSKVFHRRYHQHDVKAmASFEGKGmSVVVSGGSDASPIVLPLRALGKEFHRTLPHLPQHPTVLSAPKARYILSWWENEIRIWHLLNKNRKFLAQVLIKGASHITSASISEDGTLLAASTPTDVKVFHLDPAAAQRNGQLYIKKVNmTGTGLGATRVQISPDKRWICWAEEGSKVmISRVHATESADGISYTVSVPHKLHRLRRQIPKHILLGGLGSYDRNVSQIAFSADSRmLSVADLAGYIDTWVLRGPAGERWARNPKAAmIPKLSAAPVVLSFSPTPRDDGDYDLLVVTTLKQLLIFNPLRGmLSEWSRRNTYPKLPEPFRDTRDQVKGIVWQGQRAWFYGVASLFmFDLSQDFSAKWWHTYQFRPImGIVPIEGIPPLEVALIERPLS 868
                                    -1 |       9        19        29        39        49        59        69        79        89|       99       109       119       129       139 ||    155       165       175       185       195       205       215   |   225||     241       251       261       271       281       291    |  301    |  311       321       331     | 341       351       361       371       381       391      |417       427       437       447       457       467      |477       487       497     | 507       517       527       537       547       557  |    567       577||     618   |   628       638       648       658      |668       678       688       698       708|      824       834 |     855       865   
                                       1-MSE                                                                                   90-MSE                                            141|                                                                    219-MSE  ||                                                            296-MSE   306-MSE                329-MSE 337-MSE                                                      398|                                                        474-MSE                      503-MSE                                                  560-MSE           578|         622-MSE                                    665-MSE                                     709-MSE 717|         836-MSE843|             
                                                                                                                                                                                  148                                                                        223-MSE                                                                                                                                                                   415                                                                                                                                                                 610                                                                                                         824                 855             
                                                                                                                                                                                                                                                                226|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                                 233                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:706
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeee.........eeeeee....................eeeee....eeeeehhhhh.eeeeee.........eeeeee...ee.....ee...eeeeee....eeeeee....eeeeeee.....eeeeee.......hhhhhh..eeeeee....eeeee.hhhh.eeeee.........eeeeee....eeeeee...eeeeee.....eeeeee.........eeee.....eeee....eeeee......eeeeee.....eeeeee......eeeee...eeeeeee.......eeeeeeee.....eeeeeeeee..eeeeeeee.....eeee.hhh.....ee.........eeee....eeeeee..eeeeeee...eeeeeeee........eeee.....eeeee....eeeeeeeeeee.....eeeeee..........eeee.....eeeeee...eeeeeeeeeeee..eeeeee...eee.......hhhhhh....hhhh.eeeeee.....eeeeee....eeeeeee....eeee..hhhhh......eeeeee...........eeeee....eeeee....eehhhhhhhhhhhh..........eeeeeee..eeeeee...eeeee.........eee.....eeeeeee.....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n1a B -11 PTTENLYFQGAHmDIHRCRFVRYPASAINAVAFTHSALPVVSSSYLQKNIQVRLAIGRANGDIEIWNPLNGGWYQEVIIPGGKDRSVDGLVWVTDPDEEmADGKIIHGKSRLFSIGYTTTITEWDLEKARAKKHASGQHGEIWCFGVQPLPHKANAAAAQNRKLVAGTVDGNLVLYSIEDGDLKFQKTLTRTSKKTKFVSIAFQSHNIVIVGCSNSTICAYDVRTGTmLRQmTLGSKNIIVWAVKCLPNGDIVSGDSTGQVCIWDGKTYTQAQRIQSHTQDVLCLSVSADGSKIISGGmDRRTAVYEPmAGQSGRWSKVFHRRYHQHDVKAmASFEGKGmSVVVSGGSDASPIVLPLRALGKEFHRTLPHLPQHPTVLSAPKARYILSWWENEIRIWHLLNNRKFLAQVLIKGASHITSASISEDGTLLAASTPTDVKVFHLDPAAAQRNGQLYIKKVNmTGTGLGATRVQISPDKRWICWAEEGSKVmISRVHATESADGISYTVSVPHKLHRLRRQIPKHILLGGLGSYDRNVSQIAFSADSRmLSVADLAGYIDTWVLRGPGERWARNPKAAmIPKLSAAPVVLSFSPTPRDDGDYDLLVVTTLKQLLIFNPLRGmLSEWSRRNTYPKLPEPFRDTRDQVKGIVWQGQRAWFYGVASLFmFDLSQDFSAKWWHTYQFRPImGIVPIEGIPPLEVALIERPLSE 869
                                    -2  |      8        18        28   ||   40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 ||    191       201       211       221 |  || 237       247       257       267       277       287       297       307       317       327 |     337       347       357       367       377       387       397||     424       434       444       454       464       474       484       494       504       514       524       534       544       554     | 564       574   ||  616     | 626       636       646       656       666       676       686       696       706  |    716||     832   |   842||     863      
                                        1-MSE                         32|                                                     90-MSE                                                                                     182|                                219-MSE  ||                                                            296-MSE   306-MSE                329-MSE 337-MSE                                                      398|                                                       474-MSE                      503-MSE                                                  560-MSE           578|        622-MSE                                    665-MSE                                     709-MSE 717|         836-MSE843|              
                                                                       35                                                                                                                                                 184                                    223-MSE                                                                                                                                                                   416                                                                                                                                                                611                                                                                                        824                 855              
                                                                                                                                                                                                                                                                    226|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
                                                                                                                                                                                                                                                                     233
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5N1A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5N1A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5N1A)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Arg A:833 - Pro A:834   [ RasMol ]  
    Arg B:833 - Pro B:834   [ RasMol ]  
 
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