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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TETANUS NEUROTOXIN IN COMPLEX WITH GD1A
 
Authors :  G. Masuyer, J. Conrad, P. Stenmark
Date :  02 Feb 17  (Deposition) - 21 Jun 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Tetanus Neurotoxin, Tetanospasmin, Tentoxilysin, Clostridial Toxin, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Masuyer, J. Conrad, P. Stenmark
The Structure Of The Tetanus Toxin Reveals Ph-Mediated Domain Dynamics.
Embo Rep. 2017
PubMed-ID: 28645943  |  Reference-DOI: 10.15252/EMBR.201744198

(-) Compounds

Molecule 1 - TETANUS TOXIN
    Chains: A
    EC Number: 3.4.24.68
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Gene: TETX, CTC_P60
    Mutation: YES
    Organism Scientific: CLOSTRIDIUM TETANI
    Organism Taxid: 1513
    Other Details: CATALYTICALLY INACTIVE VARIANT OF THE TETANUS NEUROTOXIN
    Synonym: TENTOXYLYSIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 8)

Asymmetric/Biological Unit (6, 8)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2GAL2Ligand/IonBETA-D-GALACTOSE
3NGA1Ligand/IonN-ACETYL-D-GALACTOSAMINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5SIA2Ligand/IonO-SIALIC ACID
6ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:233 , HIS A:237 , HOH A:1584binding site for residue ZN A 1401
2AC2SOFTWAREHIS A:233 , PHE A:275 , GLU A:360 , PHE A:375 , SER A:377 , ASN A:379binding site for residue PEG A 1402
3AC3SOFTWARESER A:255 , ALA A:479 , GLU A:480 , LYS A:481 , TYR A:676 , GLU A:679 , ASN A:1219 , LEU A:1221 , ASP A:1222 , THR A:1270 , HIS A:1271 , ILE A:1285 , TRP A:1289 , TYR A:1290 , HOH A:1517 , HOH A:1564binding site for Poly-Saccharide residues BGC A 1403 through SIA A 1408

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:439 -A:467
2A:869 -A:1093

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5N0B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5N0B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5N0B)

(-) Exons   (0, 0)

(no "Exon" information available for 5N0B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1280
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeeehhhhh.....eeeeeee..eeee........hhhhhh...ee.....ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ee.......eeeee.........eeeee..eeee.........eeee..ee....ee..........eeee....ee.eee......ee......eee.hhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....hhhhhhhhhhhhhheee.....eeehhhhhhhhhhhhhhh.hhhhhhhhhh..............ee.................hhhhh.hhhhh...........ee.....ee..eeeee...eeee.hhh....hhhhh.hhhhh..ee.............hhhhhhhhhhhh........ee................ee...eeee....hhhhhhhh..........eee.hhhhhhhh..eee..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh................hhhhhhh........hhhhhhhhhhhhhhh..............ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh..............hhhhhhhhheeeeeeee..eeee......eeee....eeee....eeeeee......eeee.hhhhh.......eeeeeeee....hhhhhhhhh..eeeeee.....eeeeeee..eeeeeee.....eeeeeee...hhhhh......eeeeeee....eeeeee..eeeeeee...........eeeeeee.......eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.hhh.eeeee......eeeee..eeee....eeee......eeeeee..............eeeeeeee....eeeeeee....eehhheee.ee........ee.eeeee..........eeeee.....eeeeeeeeee.......eeeeeeehhhhhh.........eeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5n0b A    1 MPITINNFRYSDPVNNDTIIMMEPPYCKGLDIYYKAFKITDRIWIVPERYEFGTKPEDFNPPSSLIEGASEYYDPNYLRTDSDKDRFLQTMVKLFNRIKNNVAGEALLDKIINAIPYLGNSYSLLDKFDTNSNSVSFNLLEQDPSGATTKSAMLTNLIIFGPGPVLNKNEVRGIVLRVDNKNYFPCRDGFGSIMQMAFCPEYVPTFDNVIENITSLTIGKSKYFQDPALLLMHELIHVLHGLYGMQVSSHEIIPSKQEIYMQHTYPISAEELFTFGGQDANLISIDIKNDLYEKTLNDYKAIANKLSQVTSCNDPNIDIDSYKQIYQQKYQFDKDSNGQYIVNEDKFQILYNSIMYGFTEIELGKKFNIKTALSFFSMNHDPVKIPNLLDDTIYNDTEGFNIESKDLKSEYKGQNMRVNTNAFRNVDGSGLVSKLIGLCKLCIKIKNEDLTFIAEKNSFSEEPFQDEIVSYNTKNKPLNFNYSLDKIIVDYNLQSKITLPNDRTTPVTKGIPYAPEYKSNAASTIEIHNIDDNTIYQYLYAQKSPTTLQRITMTNSVDDALINSTKIYSYFPSVISKVNQGAQGILFLQWVRDIIDDFTNESSQKTTIDKISDVSTIVPYIGPALNIVKQGYEGNFIGALETTGVVLLLEYIPEITLPVIAALSIAESSTQKEKIIKTIDNFLEKRYEKWIEVYKLVKAKWLGTVNTQFQKRSYQMYRSLEYQVDAIKKIIDYEYKIYSGPDKEQIADEINNLKNKLEEKANKAMININIFMRESSRSFLVNQMINEAKKQLLEFDTQSKNILMQYIKANSKFIGITELKKLESKINKVFSTPIPFSYSKNLDCWEDIDVILKKSTILNLDINNDIISDISGFNSSVITYPDAQLVPGINGKAIHLVNNESSEVIVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFITITNDRLSSANLYINGVLMGSAEITGLGAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKALNPKEIEKLYTSYLSITFLRDFWGNPLRYDTEYYLIPVASSSKDVQLKNITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFIKLYVSYNNNEHIVGYPKDGNAFNNLDRILRVGYNAPGIPLYKKMEAVKLRDLKTYSVQLKLYDDKNASLGLVGTHNGQIGNDPNRDILIASNWYFNHLKDKILGCDWYFVPTDEGWTND 1315
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440|      475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865    || 879       889       899       909       919       929       939       949       959       969       979 ||    995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 440|                                                                                                                                                                                                                                                                                                                                                                                                                 870|                                                                                                       981|                                                                                                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  466                                                                                                                                                                                                                                                                                                                                                                                                                  875                                                                                                        988
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5N0B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5N0B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5N0B)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  5n0b
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 Related Entries

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UniProtKB/Swiss-Prot
        TETX_CLOTE | P04958: 1a8d 1af9 1d0h 1dfq 1diw 1dll 1fv2 1fv3 1yvg 1yxw 1yyn 1z7h 3hmy 3hn1 4j1l 5n0c

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