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(-) Description

Title :  MONOBODY MB(LCK_1) BOUND TO LCK-SH2
 
Authors :  F. Pojer, T. Kukenshoner, S. Koide, O. Hantschel
Date :  10 Jan 17  (Deposition) - 05 Apr 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Src Homology 2, Monobodies, Directed Evolution, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kukenshoner, N. E. Schmit, E. Bouda, F. Sha, F. Pojer, A. Koide, M. Seeliger, S. Koide, O. Hantschel
Selective Targeting Of Sh2 Domain-Phosphotyrosine Interactions Of Src Family Tyrosine Kinases With Monobodies
J. Mol. Biol. V. 429 1364 2017
PubMed-ID: 28347651  |  Reference-DOI: 10.1016/J.JMB.2017.03.023

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE LCK
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: LCK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LEUKOCYTE C-TERMINAL SRC KINASE,LSK,LYMPHOCYTE CELL-SPECIFIC PROTEIN-TYROSINE KINASE,PROTEIN YT16,PROTO-ONCOGENE LCK,T CELL- SPECIFIC PROTEIN-TYROSINE KINASE,P56-LCK
 
Molecule 2 - MONOBODY MB(LCK_1)
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:29 , GLY A:30 , LYS B:9binding site for residue SO4 A 201
2AC2SOFTWARELYS B:57 , SER B:58 , THR B:59binding site for residue SO4 B 101
3AC3SOFTWAREASN A:70 , LYS B:57 , THR B:61binding site for residue SO4 B 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MTN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser B:2 -Val B:3
2Val B:6 -Pro B:7

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MTN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MTN)

(-) Exons   (0, 0)

(no "Exon" information available for 5MTN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:88
                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee...hhhhhhhhhhh.......eeeee.......eeeeeeee...eeeeeee.ee.....ee....ee..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  5mtn A  6 SLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYT 95
                                    15        25        35        45        55 ||     67        77        87        
                                                                              57|                                   
                                                                               60                                   


Chain B from PDB  Type:PROTEIN  Length:94
                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee....eeeee........eeeeeeee........eeeeee....eeee.......eeeeeeeee....ee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  5mtn B  2 SVSSVPTKLEVVAATPTSLLISWDAPAVTVVYYLITYGETGSPWPGGQAFEVPGSKSTATISGLKPGVDYTITVYAHRSSYGYSENPISINYRT 95
                                    11        21        31        41        51        61        71        81        91
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MTN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MTN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MTN)

(-) Gene Ontology  (55, 55)

Asymmetric/Biological Unit(hide GO term definitions)

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  LCK_HUMAN | P06239
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LCK_HUMAN | P06239: 1bhf 1bhh 1cwd 1cwe 1fbz 1h92 1ijr 1kik 1lcj 1lck 1lkk 1lkl 1q68 1q69 1qpc 1qpd 1qpe 1qpj 1x27 2iim 2of2 2of4 2ofu 2ofv 2og8 2pl0 2zm1 2zm4 2zyb 3ac1 3ac2 3ac3 3ac4 3ac5 3ac8 3acj 3ack 3ad4 3ad5 3ad6 3b2w 3brh 3bym 3byo 3bys 3byu 3kmm 3kxz 3lck 3mpm 4c3f 4d8k 5mtm

(-) Related Entries Specified in the PDB File

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