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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LEUCINE ZIPPER OF HUMAN PRKCBP1
 
Authors :  T. Krojer, P. Savitsky, S. Picaud, J. Newman, C. Tallant, C. Heroven, F. Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, P. Filippakopoulo
Date :  20 Dec 16  (Deposition) - 25 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,E  (1x)
Keywords :  Leucine Zipper, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Krojer, P. Savitsky, S. Picaud, P. Filippakopoulos
Crystal Structure Of The Leucine Zipper Of Human Prkcbp1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN KINASE C-BINDING PROTEIN 1
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ZMYND8, KIAA1125, PRKCBP1, RACK7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CUTANEOUS T-CELL LYMPHOMA-ASSOCIATED ANTIGEN SE14-3,CTCL- ASSOCIATED ANTIGEN SE14-3,RACK7,ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 8

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  D  
Biological Unit 2 (1x):  B   F
Biological Unit 3 (1x):   C E 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric Unit (2, 17)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
2ZN12Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:1011 , ARG A:1014 , ARG F:1012binding site for residue SO4 A 1201
02AC2SOFTWARECYS A:1089 , CYS A:1090 , HIS A:1108 , CYS A:1112binding site for residue ZN A 1202
03AC3SOFTWARECYS A:1078 , CYS A:1081 , CYS A:1096 , CYS A:1100binding site for residue ZN A 1203
04AC4SOFTWAREARG B:1011 , ARG B:1014 , ARG D:1012binding site for residue SO4 B 1201
05AC5SOFTWARECYS B:1078 , CYS B:1081 , CYS B:1096 , CYS B:1100binding site for residue ZN B 1202
06AC6SOFTWARECYS B:1089 , CYS B:1090 , HIS B:1108 , CYS B:1112binding site for residue ZN B 1203
07AC7SOFTWARECYS C:1089 , CYS C:1090 , HIS C:1108 , CYS C:1112binding site for residue ZN C 1201
08AC8SOFTWARECYS C:1078 , CYS C:1081 , CYS C:1096 , CYS C:1100binding site for residue ZN C 1202
09AC9SOFTWAREGLN A:1076 , TYR A:1088 , ASN A:1092 , SER A:1094 , GLN D:1076 , ASN D:1092 , SER D:1094binding site for residue SO4 D 1201
10AD1SOFTWARECYS D:1089 , CYS D:1090 , HIS D:1108 , CYS D:1112binding site for residue ZN D 1202
11AD2SOFTWARECYS D:1078 , CYS D:1081 , CYS D:1096 , CYS D:1100binding site for residue ZN D 1203
12AD3SOFTWAREGLN C:1076 , CYS C:1090 , ASN C:1092 , GLN E:1076 , TYR E:1088 , ASN E:1092 , SER E:1094binding site for residue SO4 E 1201
13AD4SOFTWARECYS E:1089 , CYS E:1090 , HIS E:1108 , CYS E:1112binding site for residue ZN E 1202
14AD5SOFTWARECYS E:1078 , CYS E:1081 , CYS E:1096 , CYS E:1100binding site for residue ZN E 1203
15AD6SOFTWAREGLN B:1076 , CYS B:1090 , ASN B:1092 , SER B:1094 , GLN F:1076 , ASN F:1092 , SER F:1094binding site for residue SO4 F 1201
16AD7SOFTWARECYS F:1089 , CYS F:1090 , HIS F:1108 , CYS F:1112 , THR F:1113binding site for residue ZN F 1202
17AD8SOFTWARECYS F:1078 , CYS F:1081 , CYS F:1096 , CYS F:1100binding site for residue ZN F 1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MQ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MQ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 5MQ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeee..eee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                5mq4 A 1002 TTGSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQ 1114
                                  1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111   


Chain B from PDB  Type:PROTEIN  Length:111
                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeee..eee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                5mq4 B 1004 GSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQ 1114
                                  1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113 


Chain C from PDB  Type:PROTEIN  Length:117
                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeee..eee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                5mq4 C    0 MSKNTTGSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQ 1114
                            ||    1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107       
                            0|                                                                                                                   
                           999                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:111
                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeee..eee.hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                5mq4 D 1004 GSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQ 1114
                                  1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113 


Chain E from PDB  Type:PROTEIN  Length:111
                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeee..eee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                5mq4 E 1004 GSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQ 1114
                                  1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113 


Chain F from PDB  Type:PROTEIN  Length:111
                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeee..eee.hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                5mq4 F 1004 GSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQ 1114
                                  1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MQ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MQ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MQ4)

(-) Gene Ontology  (21, 21)

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        PKCB1_HUMAN | Q9ULU4: 4cos 5b73

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