Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  ORYZA SATIVA PHYTOENE DESATURASE INHIBITED BY NORFLURAZON
 
Authors :  A. Brausemann, S. Gemmecker, J. Koschmieder, P. Beyer, O. Einsle
Date :  14 Dec 16  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.77
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Inhibitor, Oxidoreductase, Isomerase, Carotenoid Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Brausemann, S. Gemmecker, J. Koschmieder, S. Ghisla, P. Beyer, O. Einsle
Structure Of Phytoene Desaturase Provides Insights Into Herbicide Binding And Reaction Mechanisms Involved In Carotene Desaturation.
Structure 2017
PubMed-ID: 28669634  |  Reference-DOI: 10.1016/J.STR.2017.06.002

(-) Compounds

Molecule 1 - PHYTOENE DEHYDROGENASE, CHLOROPLASTIC/CHROMOPLASTIC
    ChainsA, B, C, D, E
    EC Number1.3.99.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainTUNER (DE3)
    Expression System Taxid562
    GenePDS1, PDS, OSI_010044
    Organism CommonRICE
    Organism ScientificORYZA SATIVA SUBSP. INDICA
    Organism Taxid39946
    SynonymPHYTOENE DESATURASE

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 23)

Asymmetric/Biological Unit (5, 23)
No.NameCountTypeFull Name
1EPE5Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2FAD5Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3IMD6Ligand/IonIMIDAZOLE
4NRF5Ligand/IonNORFLURAZON
5TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:111 , GLY A:113 , LEU A:114 , ALA A:115 , LEU A:133 , GLU A:134 , ALA A:135 , ARG A:136 , GLY A:140 , GLY A:141 , LYS A:142 , ILE A:143 , GLY A:157 , LEU A:158 , HIS A:159 , ILE A:160 , TYR A:165 , PHE A:283 , ARG A:341 , ILE A:342 , ALA A:372 , THR A:373 , ILE A:377 , GLY A:530 , ASP A:531 , ALA A:539 , SER A:540 , MET A:541 , ALA A:544 , NRF A:601 , HOH A:703 , HOH A:728binding site for residue FAD A 600
02AC2SOFTWAREPHE A:162 , TYR A:165 , MET A:277 , ALA A:280 , LEU A:281 , PHE A:283 , ARG A:300 , LEU A:421 , PHE A:423 , ALA A:539 , SER A:540 , FAD A:600binding site for residue NRF A 601
03AC3SOFTWAREARG A:136 , ASP A:137 , VAL A:138 , TRP A:146 , ASP B:137binding site for residue EPE A 602
04AC4SOFTWAREASN A:222 , TRP A:227 , LYS A:230binding site for residue EPE A 603
05AC5SOFTWAREHIS A:306binding site for residue IMD A 604
06AC6SOFTWAREGLY B:111 , GLY B:113 , LEU B:114 , ALA B:115 , LEU B:133 , GLU B:134 , ALA B:135 , ARG B:136 , GLY B:140 , GLY B:141 , LYS B:142 , ILE B:143 , GLY B:157 , LEU B:158 , HIS B:159 , ILE B:160 , TYR B:165 , PHE B:283 , ARG B:341 , ILE B:342 , ALA B:372 , THR B:373 , ILE B:377 , GLY B:530 , ASP B:531 , ALA B:539 , SER B:540 , MET B:541 , ALA B:544 , NRF B:601 , HOH B:701 , HOH B:727 , HOH B:734 , HOH B:737 , HOH B:767binding site for residue FAD B 600
07AC7SOFTWAREPHE B:162 , TYR B:165 , MET B:277 , ALA B:280 , LEU B:281 , PHE B:283 , ARG B:300 , LEU B:421 , PHE B:423 , ALA B:539 , SER B:540 , FAD B:600binding site for residue NRF B 601
08AC8SOFTWAREASP A:137 , ASN A:339 , ARG B:136 , ASP B:137 , VAL B:138 , TRP B:146binding site for residue EPE B 602
09AC9SOFTWARETRP B:227binding site for residue EPE B 603
10AD1SOFTWAREMET B:323 , ARG B:330 , LEU B:338binding site for residue TRS B 604
11AD2SOFTWAREGLN B:169 , HIS B:306binding site for residue IMD B 606
12AD3SOFTWAREGLY C:111 , GLY C:113 , LEU C:114 , ALA C:115 , LEU C:133 , GLU C:134 , ALA C:135 , ARG C:136 , GLY C:140 , GLY C:141 , LYS C:142 , ILE C:143 , GLY C:157 , LEU C:158 , HIS C:159 , ILE C:160 , TYR C:165 , PHE C:283 , ARG C:341 , ILE C:342 , ALA C:372 , THR C:373 , ILE C:377 , GLY C:530 , ASP C:531 , ALA C:539 , SER C:540 , MET C:541 , ALA C:544 , NRF C:601 , HOH C:728binding site for residue FAD C 600
13AD4SOFTWAREPHE C:162 , TYR C:165 , MET C:277 , ALA C:280 , LEU C:281 , PHE C:283 , ARG C:300 , LEU C:421 , PHE C:423 , ALA C:539 , SER C:540 , FAD C:600binding site for residue NRF C 601
14AD5SOFTWAREGLY D:111 , GLY D:113 , LEU D:114 , ALA D:115 , LEU D:133 , GLU D:134 , ALA D:135 , ARG D:136 , GLY D:140 , GLY D:141 , LYS D:142 , ILE D:143 , GLY D:157 , LEU D:158 , HIS D:159 , ILE D:160 , TYR D:165 , PHE D:283 , ARG D:341 , ILE D:342 , ALA D:372 , THR D:373 , ILE D:377 , GLY D:530 , ASP D:531 , ALA D:539 , SER D:540 , MET D:541 , ALA D:544 , NRF D:601 , HOH D:701 , HOH D:714 , HOH D:731 , HOH D:732binding site for residue FAD D 600
15AD6SOFTWAREPHE D:162 , TYR D:165 , MET D:277 , ALA D:280 , LEU D:281 , PHE D:283 , ARG D:300 , LEU D:421 , PHE D:423 , ALA D:539 , SER D:540 , FAD D:600binding site for residue NRF D 601
16AD7SOFTWAREMET D:323 , ARG D:330binding site for residue TRS D 602
17AD8SOFTWAREASP D:152 , TRP D:153 , TRP D:409 , TYR D:442 , MET D:449 , HOH D:739binding site for residue IMD D 603
18AD9SOFTWAREGLN D:169binding site for residue IMD D 605
19AE1SOFTWAREGLY E:111 , GLY E:113 , LEU E:114 , ALA E:115 , LEU E:133 , GLU E:134 , ALA E:135 , ARG E:136 , GLY E:140 , GLY E:141 , LYS E:142 , ILE E:143 , GLY E:157 , LEU E:158 , HIS E:159 , ILE E:160 , TYR E:165 , PHE E:283 , ARG E:341 , ILE E:342 , ALA E:372 , THR E:373 , ILE E:377 , GLY E:530 , ASP E:531 , ALA E:539 , SER E:540 , MET E:541 , ALA E:544 , NRF E:601 , HOH E:701binding site for residue FAD E 600
20AE2SOFTWAREPHE E:162 , TYR E:165 , MET E:277 , ALA E:280 , LEU E:281 , PHE E:283 , ARG E:300 , LEU E:421 , PHE E:423 , ALA E:539 , SER E:540 , FAD E:600binding site for residue NRF E 601
21AE3SOFTWARETRP E:227binding site for residue EPE E 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MOG)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1Ala A:210 -Pro A:211
2Ala A:455 -Pro A:456
3Ala B:210 -Pro B:211
4Ala B:455 -Pro B:456
5Ala C:210 -Pro C:211
6Ala C:455 -Pro C:456
7Ala D:210 -Pro D:211
8Ala D:455 -Pro D:456
9Ala E:210 -Pro E:211
10Ala E:455 -Pro E:456

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MOG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MOG)

(-) Exons   (0, 0)

(no "Exon" information available for 5MOG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhhhhhhhh..eeeee......hhhh.eee.....eee.....ee..hhhhhhhhhhh.hhh.eee...eeeee.......eeeee.......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhhhh..eee....eeeeee.....eeeeee....ee...eeee..hhhhhhhhh......hhhhhhhhh.....eeeeeeee...........ee.....eeeeeehhhhh.........eeeeee.........hhhhhhhhhhhhhhhhh............eeeeeeeee..........hhhhh.........eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mog A 101 PTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRRSL 567
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       

Chain B from PDB  Type:PROTEIN  Length:472
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee..hhhhhhhhhhhhhh..eeeee......hhhh.eee.....eee.....ee..hhhhhhhhhhh.hhh.eee...eeeee.......eeeee.......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhhhh..eee....eeeeee.....eeeeee....ee...eeee..hhhhhhhhh......hhhhhhhhh.....eeeeeeee...........ee.....eeeeeehhhhh.........eeeeee.........hhhhhhhhhhhhhhhhh............eeeeeeeee..........hhhhh.........eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mog B  95 FRNSEQPTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRRS 566
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564  

Chain C from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhh..eeeee......hhhh.eee.....eee.....ee..hhhhhhhhhhh.hhh.eee...eeeee.......eeeee.......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhhhh..eee....eeeeee.....eeeeee....ee...eeee..hhhhhhhhh......hhhhhhhhh.....eeeeeeee...........ee.....eeeeeehhhhh.........eeeeee.........hhhhhhhhhhhhhhhhh............eeeeeeeee..........hhhhh.........eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mog C 102 TKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRRSLKSLQ 571
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571

Chain D from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhh..eeeee......hhhh.eee.....eee.....ee..hhhhhhhhhhh.hhh.eee...eeeee.......eeeee.......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhhhh..eee....eeeeee.....eeeeee....ee...eeee..hhhhhhhhh......hhhhhhhhh.....eeeeeeee...........ee.....eeeeeehhhhh.........eeeeee.........hhhhhhhhhhhhhhhhh............eeeeeeeee..........hhhhh.........eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mog D 102 TKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRRSLKSLQ 571
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571

Chain E from PDB  Type:PROTEIN  Length:466
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhh..eeeee......hhhh.eee.....eee.....ee..hhhhhhhhhhh.hhh.eee...eeeee.......eeeee.......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhhhh..eee....eeeeee.....eeeeee....ee...eeee..hhhhhhhhh......hhhhhhhhh.....eeeeeeee...........ee.....eeeeeehhhhh.........eeeeee.........hhhhhhhhhhhhhhhhh............eeeeeeeee..........hhhhh.........eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mog E 102 TKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRRSL 567
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MOG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MOG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MOG)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5MOG)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    EPE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    IMD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NRF  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TRS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
    AE2  [ RasMol ]  +environment [ RasMol ]
    AE3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:210 - Pro A:211   [ RasMol ]  
    Ala A:455 - Pro A:456   [ RasMol ]  
    Ala B:210 - Pro B:211   [ RasMol ]  
    Ala B:455 - Pro B:456   [ RasMol ]  
    Ala C:210 - Pro C:211   [ RasMol ]  
    Ala C:455 - Pro C:456   [ RasMol ]  
    Ala D:210 - Pro D:211   [ RasMol ]  
    Ala D:455 - Pro D:456   [ RasMol ]  
    Ala E:210 - Pro E:211   [ RasMol ]  
    Ala E:455 - Pro E:456   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5mog
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CRTI_ORYSI | A2XDA1
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.3.99.-
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  CRTI_ORYSI | A2XDA1
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 5MOG)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5MOG)