5MJ1 - JenaLib

Title :   EXTRACELLULAR DOMAIN OF HUMAN CD83 - RHOMBOHEDRAL CRYSTAL FORM

Authors :   S. Klingl, C. Egerer-Sieber, B. Schmid, S. Weiler, Y. A. Muller

Date :   29 Nov 16 (Deposition) - 29 Mar 17 (Release) - 26 Apr 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Dendritic Cell, Receptor, Immunoglobulin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. S. Heilingloh, S. Klingl, C. Egerer-Sieber, B. Schmid, S. Weiler, P. Muhl-Zurbes, J. Hofmann, J. D. Stump, H. Sticht, M. Kummer, A. Steinkasserer, Y. A. Muller
Crystal Structure Of The Extracellular Domain Of The Human Dendritic Cell Surface Marker Cd83.
J. Mol. Biol. V. 429 1227 2017
PubMed-ID: 28315353 | Reference-DOI: 10.1016/J.JMB.2017.03.009

Compounds

Molecule 1 - CD83 ANTIGEN
	Cell	:	DENDRITIC CELLS
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-2T
	Expression System Taxid	:	562
	Expression System Variant	:	BL21GOLD(DE3)PLYSS
	Expression System Vector Type	:	PLASMID
	Gene	:	CD83
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	THE FIRST FOUR RESIDUES (GSPG) ARE NON-NATIVE RESIDUES OF THE LINKER WHICH REMAIN AFTER THE GST-TAG WAS CLEAVED OFF. THE THIRD RESIDUE (P) WAS MODELED AS ALANINE DUE TO MISSING ELECTRON DENSITY. THE FIRST AND LAST TWO RESIDUES AS WELL AS THE CENTRAL REGION WERE NOT VISIBLE IN THE ELECTRON DENSITY MAPS.
	Synonym	:	HCD83,B-CELL ACTIVATION PROTEIN,CELL SURFACE PROTEIN HB15

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:PROTEIN  Length:81
                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....eee............eeeeeee........eee...hhhhheeeeeeee......eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 5mj1 A  18 PGTPEVKVASSEDVDLPCTAPWDPQVPYTVSWVKLLENERPYSLKIRNTTSSNSGTYRCTLQDPDGQRNLSGKVILRVTGS 129
                                    27        37        47      ||88        98       108       118       128 
                                                               54|                                           
                                                                86

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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (14, 14)

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