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(-) Description

Title :  CRYSTAL STRUCTURE OF BAZ2A BROMODOMAIN IN COMPLEX WITH 4-CHLOROPYRIDINE DERIVATIVE 3
 
Authors :  G. Lolli, D. Spiliotopoulos, A. Caflisch
Date :  21 Nov 16  (Deposition) - 12 Apr 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Four Helical Bundle, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Spiliotopoulos, E. Wamhoff, G. Lolli, C. Rademacher, A. Caflisch
In Silico Discovery Of Baz2A Bromodomain Ligands
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: BROMODOMAIN, UNP RESIDUES 1796-1898
    Gene: BAZ2A, KIAA0314, TIP5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: FIRST TWO RESIDUES SM DERIVE FROM THE EXPRESSION TAG
    Synonym: TRANSCRIPTION TERMINATION FACTOR I-INTERACTING PROTEIN 5, TIP5,HWALP3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
17MU1Ligand/Ion4-CHLORANYL-~{N}-METHYL-PYRIDINE-2-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1817 , PHE A:1818 , VAL A:1822 , TYR A:1830 , PHE A:1872 , ASN A:1873 , HOH A:2003binding site for residue 7MU A 1901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MGL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MGL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MGL)

(-) Exons   (0, 0)

(no "Exon" information available for 5MGL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh............hhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                5mgl A 1799 LTFCEIILMEMESHDAAWPFLEPVNPRLVSGYRRIIKNPMDFSTMRERLLRGGYTSSEEFAADALLVFDNCQTFNEDDSEVGKAGHIMRRFFESRWEEFY 1898
                                  1808      1818      1828      1838      1848      1858      1868      1878      1888      1898
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MGL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MGL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MGL)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  5mgl
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAZ2A_HUMAN | Q9UIF9: 4lz2 4q6f 4qbm 4qf2 5agq 5mgj 5mgk 5mgm 5t8r

(-) Related Entries Specified in the PDB File

5mgg 5MGG CONTAINS THE SAME LIGAND COMPLEXED WITH A DIFFERENT BROMODOMAIN (BAZ2B).
5mgj 5MGJ CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT FRAGMENT.
5mgk 5MGK CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT FRAGMENT.