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(-) Description

Title :  ZIKA NS3 HELICASE:RNA COMPLEX
 
Authors :  H. T. Jenkins, M. Ge, M. Chechik, S. J. Greive, A. A. Antson
Date :  18 Nov 16  (Deposition) - 11 Jan 17  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Helicase, Rna, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. T. Jenkins, M. Ge, M. Chechik, S. J. Greive, A. A. Antson
How Zika Virus Ns3 Helicase Grips The First Nucleotide Of The Leading Rna Strand
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GENOME POLYPROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1685-2125
    Organism Common: ZIKV
    Organism Scientific: ZIKA VIRUS (STRAIN MR 766)
    Organism Taxid: 64320
    Strain: MR 766
 
Molecule 2 - RNA (5'-R(P*AP*GP*AP*CP*U)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: ZIKA VIRUS
    Organism Taxid: 64320
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2FLC1Ligand/IonCITRATE ANION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:323 , THR A:449 , HIS A:450 , ALA A:478 , ASP A:481 , HOH A:914binding site for residue ACT A 701
2AC2SOFTWAREPRO A:196 , GLY A:197 , ALA A:198 , GLY A:199 , LYS A:200 , THR A:201 , ARG A:202 , ARG A:459 , ARG A:462 , HOH A:805 , HOH A:810 , HOH A:1045binding site for residue FLC A 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MFX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:444 -Pro A:445

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MFX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MFX)

(-) Exons   (0, 0)

(no "Exon" information available for 5MFX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:434
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee.........hhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh....eee..............eeeeehhhhhhhhhh........eeeee.....hhhhhhhhhhhhhhhhh...eeeeee.................eeee...........hhhhhh....eeee..hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...eeee.hhhhh.......eeee..eeeeeeee...eeeeeeeee.hhhhhhhhhh...........eeee...........hhhhhhhhhhh...hhhhh....hhhhhh...........hhhhhhhhhhhhhh...hhhhhhhhhhh......hhhhh..hhhhh.ee..ee.eee.....eee......hhhhh.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mfx A 183 MLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDYSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGK 616
                                   192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612    


Chain B from PDB  Type:DNA/RNA  Length:5
                                     
                 5mfx B   1 AGACU   5
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MFX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MFX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MFX)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5MFX)

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