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(-) Description

Title :  CRYSTAL STRUCTURE OF TRUNCATED HUMAN COATOMER PROTEIN COMPLEX, SUBUNIT Z1 (COPZ1)
 
Authors :  S. Lunev, M. R. Groves
Date :  09 Nov 16  (Deposition) - 28 Dec 16  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cancer, Dormant Cells, Human Copi, Copz1, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Lunev, M. F. Semmelink, J. L. Xian, K. Y. Ma, A. J. Leenders, A. S. Domling, M. Shtutman, M. R. Groves
Crystal Structure Of Truncated Human Coatomer Protein Complex Subunit Zeta 1 (Cop Zeta 1).
Acta Crystallogr F Struct V. 73 1 2017 Biol Commun
PubMed-ID: 28045387  |  Reference-DOI: 10.1107/S2053230X16018896

(-) Compounds

Molecule 1 - COATOMER SUBUNIT ZETA-1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA 2 PLYSS
    Fragment: UNP RESIDUES 1-177
    Gene: COPZ1, COPZ, CGI-120, HSPC181
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ZETA-1-COAT PROTEIN,ZETA-1 COP

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5MC7)

(-) Sites  (0, 0)

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(no "SS Bond" information available for 5MC7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeeeee......hhhhhhhhhhhhhhh......eeeee..eeeeeee...eeeeeeee...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mc7 A  12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150
                                    21        31        41        51        61        71        81        91       101       111       121       131       141         


Chain B from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeeeee......hhhhhhhhhhhhhhhhh.....eeee..eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mc7 B  12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150
                                    21        31        41        51        61        71        81        91       101       111       121       131       141
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MC7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MC7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MC7)

(-) Gene Ontology  (19, 19)

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  COPZ1_HUMAN | P61923
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 Related Entries

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UniProtKB/Swiss-Prot
        COPZ1_HUMAN | P61923: 2hf6

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