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(-) Description

Title :  STRUCTURE OF APO STRUCTURE OF GH36 ALPHA-GALACTOSIDASE FROM THERMOTOGA MARITIMA
 
Authors :  R. Pengelly, T. Gloster
Date :  06 Oct 16  (Deposition) - 09 Nov 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Galactosidase, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Adamson, R. J. Pengelly, S. Shamsi Kazem Abadi, S. Chakladar, J. Draper, R. Britton, T. M. Gloster, A. J. Bennet
Structural Snapshots For Mechanism-Based Inactivation Of A Glycoside Hydrolase By Cyclopropyl Carbasugars.
Angew. Chem. Int. Ed. Engl. V. 55 14978 2016
PubMed-ID: 27783466  |  Reference-DOI: 10.1002/ANIE.201607431

(-) Compounds

Molecule 1 - ALPHA-GALACTOSIDASE
    Chains: A
    EC Number: 3.2.1.22
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GALA
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Other Details: DIFFERENCES AT THE N-TERMINUS ARISE FROM THE VECTOR USED FOR EXPRESSION (PRIMARILY A HIS TAG). DIFFERENCES AT THE C- TERMINUS ARISE FROM THE LACK OF ELECTRON DENSITY MEANING THIS PART COULD NOT BE MODELLED.

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2SO43Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:419 , ASP A:454 , HOH A:752 , HOH A:857 , HOH A:871 , HOH A:873binding site for residue MG A 601
2AC2SOFTWAREARG A:9 , PHE A:391 , GLY A:393 , GLU A:394 , HIS A:395 , HOH A:705 , HOH A:713 , HOH A:811binding site for residue SO4 A 602
3AC3SOFTWAREGLU A:434 , LYS A:435 , THR A:436binding site for residue SO4 A 603
4AC4SOFTWARELYS A:302 , ASP A:303 , GLU A:304 , LYS A:339binding site for residue SO4 A 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5M0X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5M0X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M0X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M0X)

(-) Exons   (0, 0)

(no "Exon" information available for 5M0X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:533
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.ee..ee...eeeeee...eeeeeeeeee..eeeeeeeeee...eeeeeeee...eeeee.......eeeee............hhhhhh.hhhhhh..eeee.eeee..eeeee......eeeeeee..eeeeeee.....eeeeee...eeeee..hhhhhhhhhhhhhhhhh.........eeeehhhhhhhhhhhhhhhhhhhhhhhh...eeee...................hhhhhhhhhhhh..eeeeee...eee..hhhhhhhhhhh.ee..ee.eeeee..eeeee....hhhhhhhhhhhhhhhhhh...eeee.hhhhhhh........hhhhhhhhhhhhhhhhhh...eeee....hhhhh....eee...................hhhhhhhhhhhhhhhh....eee.............hhhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhh....eeee........eeeeeeeee..eeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m0x A  -7 PRGSHMASMEIFGKTFREGRFVLKEKNFTVEFAVEKIHLGWKISGRVKGSPGRLEVLRTKAPEKVLVNNWQSWGPCRVVDAFSFKPPEIDPNWRYTASVVPDVLERNLQSDYFVAEEGKVYGFLSSKIAHPFFAVEDGELVAYLEYFDVEFDDFVPLEPLVVLEDPNTPLLLEKYAELVGMENNARVPKHTPTGWCSWYHYFLDLTWEETLKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTRGDFPSVEEMAKVIAENGFIPGIWTAPFSVSETSDVFNEHPDWVVKENGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLFSSLRKMGYRYFKIDFLFAGAVPGERKKNITPIQAFRKGIETIRKAVGEDSFILGCGSPLLPAVGCVDGMRIGPDTAPFWGEHIEDNGAPAARWALRNAITRYFMHDRFWLNDPDCLILREEKTDLTQKEKELYSYTCGVLDNMIIESDDLSLVRDHGKKVLKETLELLGGRPRVQNIMSEDLRYEIVSSGTLSGNVKIVVDLNSREYHLEKE 525
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M0X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M0X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M0X)

(-) Gene Ontology  (8, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        AGAL_THEMA | G4FEF4: 1zy9 5m12 5m16 5m1i

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