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(-) Description

Title :  CRYSTAL STRUCTURE OF CYTOCHROME P450 OLET H85Q IN COMPLEX WITH ARACHIDONIC ACID
 
Authors :  K. L. Tee, A. Munro, S. Matthews, D. Leys, C. Levy
Date :  05 Oct 16  (Deposition) - 11 Jan 17  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  C  (1x)
Keywords :  Cytochrome P450, Decarboxylase, Oxidase, Peroxide, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Matthews, J. D. Belcher, K. L. Tee, H. M. Girvan, K. J. Mclean, S. E. J. Rigby, C. W. Levy, D. Leys, D. A. Parker, R. T. Blankley, A. W. Munro
Interrogation Of The Fatty Acid Carboxylate-Binding Site In The Alkene Producing Cytochrome P450 Peroxygenase Oletje
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TERMINAL OLEFIN-FORMING FATTY ACID DECARBOXYLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: JEOTGALICOCCUS SP. ATCC 8456
    Organism Taxid: 946435
 
Molecule 2 - TERMINAL OLEFIN-FORMING FATTY ACID DECARBOXYLASE
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: JEOTGALICOCCUS SP. ATCC 8456
    Organism Taxid: 946435

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1EPA2Ligand/Ion5,8,11,14,17-EICOSAPENTAENOIC ACID
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1EPA1Ligand/Ion5,8,11,14,17-EICOSAPENTAENOIC ACID
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1EPA1Ligand/Ion5,8,11,14,17-EICOSAPENTAENOIC ACID
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3SO4-1Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:59 , ARG A:66 , ILE A:84 , HIS A:92 , LYS A:96 , PHE A:99 , ASN A:242 , THR A:243 , PRO A:246 , LEU A:247 , ALA A:249 , ILE A:250 , PHE A:253 , VAL A:292 , GLN A:354 , ASN A:362 , HIS A:363 , ARG A:364 , CYS A:365 , GLY A:367 , THR A:371 , EPA A:502 , HOH A:735 , HOH A:755binding site for residue HEM A 501
2AC2SOFTWARELEU A:78 , ILE A:170 , ARG A:245 , PRO A:246 , PHE A:294 , HEM A:501 , HOH A:755binding site for residue EPA A 502
3AC3SOFTWAREARG A:116 , THR A:117 , HIS A:120 , HOH A:610 , HOH A:637 , HOH A:716 , THR C:117 , HIS C:120 , HOH C:788binding site for residue SO4 A 503
4AC4SOFTWARETYR C:59 , ARG C:66 , HIS C:92 , LYS C:96 , PHE C:99 , ASN C:242 , THR C:243 , PRO C:246 , LEU C:247 , ALA C:249 , ILE C:250 , PHE C:253 , LEU C:295 , GLN C:354 , ASN C:362 , HIS C:363 , CYS C:365 , GLY C:367 , ILE C:370 , THR C:371 , EPA C:502 , HOH C:755 , HOH C:800binding site for residue HEM C 501
5AC5SOFTWARELEU C:78 , ARG C:245 , PRO C:246 , HEM C:501 , HOH C:812binding site for residue EPA C 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5M0O)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ile A:402 -Pro A:403
2Ile C:402 -Pro C:403

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M0O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M0O)

(-) Exons   (0, 0)

(no "Exon" information available for 5M0O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhh.hhhhhhhhhhh...eeeee...eeeeeehhhhhhhhhh....ee.....hhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....eeeeee...eee..eee....eeeeehhhhhh...........hhhhhhh.......................hhhhhhhhhhhhhhhhhhheeee.....................eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m0o A   4 LKRDKGLDNTLKVLKQGYLYTTNQRNRLNTSVFQTKALGGKPFVVVTGKEGAEMFYNNDVVQREGMLPKRIVNTLFGKGAIQTVDGKKHVDRKALFMSLMTEGNLNYVRELTRTLWHANTQRMESMDEVNIYRESIVLLTKVGTRWAGVQAPPEDIERIATDMDIMIDSFRALGGAFKGYKASKEARRRVEDWLEEQIIETRKGNIHPPEGTALYEFAHWEDYLGNPMDSRTCAIDLMNTFRPLIAINRFVSFGLHAMNENPITREKIKSEPDYAYKFAQEVRRYYPFVPFLPGKAKVDIDFQGVTIPAGVGLALDVYGTTHDESLWDDPNEFRPERFETWDGSPFDLIPQGGGDYWTNHRCAGEWITVIIMEETMKYFAEKITYDVPEQDLEVDLNSIPGYVKSGFVIKNVREVVDRT 422
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413         


Chain C from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee....hhhhhhhhh.hhhhhhhhhhh...eeeee...eeeeeehhhhhhhhhh....ee.....hhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....eeeeee...eee..eee....eeeeehhhhhh...........hhhhhhh.......................hhhhhhhhhhhhhhhhhhheeee.....................eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m0o C  -1 HHMATLKRDKGLDNTLKVLKQGYLYTTNQRNRLNTSVFQTKALGGKPFVVVTGKEGAEMFYNNDVVQREGMLPKRIVNTLFGKGAIQTVDGKKHVDRKALFMSLMTEGNLNYVRELTRTLWHANTQRMESMDEVNIYRESIVLLTKVGTRWAGVQAPPEDIERIATDMDIMIDSFRALGGAFKGYKASKEARRRVEDWLEEQIIETRIHPPEGTALYEFAHWEDYLGNPMDSRTCAIDLMNTFRPLIAINRFVSFGLHAMNENPITREKIKSEPDYAYKFAQEVRRYYPFVPFLPGKAKVDIDFQGVTIPAGVGLALDVYGTTHDESLWDDPNEFRPERFETWDGSPFDLIPQGGGDYWTNHRCAGEWITVIIMEETMKYFAEKITYDVPEQDLEVDLNSIPGYVKSGFVIKNVREVVDRT 422
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      |211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
                                                                                                                                                                                                                                        205|                                                                                                                                                                                                                     
                                                                                                                                                                                                                                         209
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M0O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M0O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M0O)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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        E9NSU2_9STAP | E9NSU2: 4l40 4l54 5m0n 5m0p

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