5LX8 - JenaLib

Title :   CRYSTAL STRUCTURE OF BT1762

Authors :   A. Basle

Date :   20 Sep 16 (Deposition) - 14 Dec 16 (Release) - 01 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.76

Chains :   Asym./Biol. Unit : A

Keywords :   Outer Membrane Protein, Protein Complex, Tonb Dependent Transporter, Carbohydrate Binding Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. J. Glenwright, K. R. Pothula, S. P. Bhamidimarri, D. S. Chorev, A. Basle, S. J. Firbank, H. Zheng, C. V. Robinson, M. Winterhalter, U. Kleinekathofer, D. N. Bolam, B. Van Den Berg
Structural Basis For Nutrient Acquisition By Dominant Members Of The Human Gut Microbiota.
Nature V. 541 407 2017
PubMed-ID: 28077872 | Reference-DOI: 10.1038/NATURE20828

Compounds

Molecule 1 - SUSD HOMOLOG
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	BT_1762
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
	Organism Taxid	:	226186

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:339 , PHE A:340 , SER A:341 , THR A:342 , HOH A:802	binding site for residue SO4 A 601
2	AC2	SOFTWARE	GLY A:442 , ARG A:443 , ILE A:444 , THR A:445 , HOH A:701 , HOH A:727 , HOH A:838	binding site for residue SO4 A 602
3	AC3	SOFTWARE	ASN A:440 , ALA A:487 , GLN A:488 , HOH A:723 , HOH A:743	binding site for residue SO4 A 603
4	AC4	SOFTWARE	ASP A:333 , SER A:334	binding site for residue SO4 A 604
5	AC5	SOFTWARE	SER A:292 , ILE A:293 , SER A:417 , HOH A:836	binding site for residue SO4 A 605
6	AC6	SOFTWARE	VAL A:71 , SER A:73 , CYS A:76 , GLU A:93 , TYR A:526 , TYR A:537 , HOH A:913	binding site for residue NA A 606
7	AC7	SOFTWARE	SER A:272 , PHE A:275 , TYR A:372 , HOH A:853	binding site for residue NA A 607
8	AC8	SOFTWARE	LYS A:321 , TRP A:384 , TYR A:393 , TYR A:394 , VAL A:395 , HOH A:755	binding site for residue NA A 608

SS Bonds (2, 2)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:532
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..hhhhhhhhhhhhhhhhhhh........hhhhhh....eeee......hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhh......hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhee.........eehhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh....eeeee......hhhhh...hhhhh...eeeehhhhhhhhee.....................ee..hhhhhee....ee..eeeee.................ee...........eee...eee...eeeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......hhhhhhh.ee..........hhhhhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhhhhhhhhh..hhhhh..............hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lx8 A  32 VTGDQIASPEYVDNLVISAYAIWATGDDINSSFSLWNYDVRSDDCYKGGSGTEDGGVFNALEISKGINTTDWNINDIWKRLYQCITRANTALQSLDQMDEKTYPLKNQRIAEMRFLRGHAHFMLKQLFKKIVIVNDENMEPDAYNELSNTTYTNDEQWQKIADDFQFAYDNLPEVQIEKGRPAQAAAAAYLAKTYLYKAYRQDGADNALTGINEEDLKQVVKYTDPLIMAKGGYGLETDYSMNFLPQYENGAESVWAIQYSINLNWGMGLTTPQILGCCDFHKPSQNLVNAFKTDSQGKPLFSTYDNENYEVATDNVDPRLFHTVGMPGFPYKYNEGYIIQKNDDWSRSKGLYGYYVSLKENVDPDCDCLKKGSYWASSLNHIVIRYADVLLMRAEALIQLNDGRITDAISLINEVRSRAAGSTMLIFNYKEDYGVNFKVTPYDLKAYAQDEAMKMLKWERRVEFGMESSRFFDLVRWGEAKDVINAYYVTEASRCSIYKNAGFTENKNEYLPVPFEQISASNGNYTQNFGW 570
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291 ||    308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568  
                                                                          80A                                                                                                                                                                                                                  293|                                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                                301

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
		Cys A:316 - Cys A:317	[ RasMol ]

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