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(-) Description

Title :  ISRAELI ACUTE PARALYSIS VIRUS HEATED TO 63 DEGREE - EMPTY PARTICLE
 
Authors :  E. Mullapudi, T. Fuzik, A. Pridal, P. Plevka
Date :  16 Sep 16  (Deposition) - 30 Nov 16  (Release) - 08 Feb 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (60x)
Keywords :  Iapv, Dicistroviridae, Empty Particle, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Mullapudi, T. Fuzik, A. Pridal, P. Plevka
Cryo-Electron Microscopy Study Of The Genome Release Of The Dicistrovirus Israeli Acute Bee Paralysis Virus.
J. Virol. V. 91 2017
PubMed-ID: 27928006  |  Reference-DOI: 10.1128/JVI.02060-16

(-) Compounds

Molecule 1 - VP1
    Chains: A
    Organism Scientific: ISRAELI ACUTE PARALYSIS VIRUS
    Organism Taxid: 294365
 
Molecule 2 - VP2
    Chains: C
    Organism Scientific: ISRAELI ACUTE PARALYSIS VIRUS
    Organism Taxid: 294365
 
Molecule 3 - STRUCTURAL POLYPROTEIN
    Chains: B
    Organism Scientific: ISRAELI ACUTE PARALYSIS VIRUS
    Organism Taxid: 294365

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (60x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5LWI)

(-) Sites  (0, 0)

(no "Site" information available for 5LWI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LWI)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Asp C:85 -Asp C:86
2Gly C:180 -Ala C:181
3Ala B:80 -Gly B:81
4Gly B:81 -Thr B:82
5Leu B:109 -Pro B:110

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LWI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LWI)

(-) Exons   (0, 0)

(no "Exon" information available for 5LWI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.....hhhhhhhhhhhhhh.....hhhhhhh..eeeeeeee......eehhhhhhhhh...............eee..eeeeeee...........eeeeeee..............eee......eeeee.........ee..........eeeee......eeeeeeee....eee.......ee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lwi A   1 INIGNKTNENVISFFDSTDAETQNHNALMKGCGEFIVNLRTLLRTFRTITDNWILQANTKTPITDLTNTTDAQGRDYMSYLSYLYRFYRGGRRYKFFNTTPLKQSQTCYIRSFLIPRNYSADEINVDGPSHITYPVINPVHEVEVPFYSQYRKIPIASTSDKGYDSSLMYFSNTATTQIVARAGNDDFTFGWMIGPPQLQGESRSVAP 208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        


Chain B from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................hhhhhh...eeeeee.......hhhhh.................eee......hhhhh........ee..eeeeeeee......eeeee..eee.....hhhhhhhhhhhhhhhh....eee.......eeee........ee........eeee.eeeeeee............eeeeeeee............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lwi B  22 SENSVETQEITTFHDVETPNRIDTPMAQDTSSARNMDDTHSIIQFLQRPVLIDNIEIIAGTTADANKPLSRYVLDQQNSQKYVRSWTLPSTVLRAGGKAQKLANFKYLRCDVQVKLVLNANPFVAGRMYLAYSPYDDKVDTARSVLQTSRAGVTGYPGVELDFQLDNSVEMTIPYASFQEAYDLVTGTEDFVQLYLFPITPVLGPKSESESSKVDISVYMWLSNISLVIPTYRINP 257
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251      


Chain C from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............................ee.......................hhhhhh...eeeeeeee..................eee........eeeeee.....eeeeeee..hhhhhhhh...eeeeeee.eeeee.....eeeeeeeee.....eee....eee................eeeee.....eeeee.........ee..............hhhhh..eeeeeeeeeee........eeeeeeeeeeeeee............................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5lwi C   1 SKPRNQQQVCPLQNVPAWGYSLYKGIDMSVPLAYDPNNELGDLKDVFPSAVDEMAIGYVCGNPAVKHVLTWKTTDAIQKPIANGDDWGGVIPVGMPCYSKSIRTTRISATENRETEVMDAAPCEYVANMFSYWRATMCYRITVVKTAFHTGRLEIFFEPGVIPVKPTVNNIGPDQDRLTGAVAPSDNNYKYILDLTNDTEVTIRVPFVSNKMFLKTAGIYGANSENNWNFHESFSGFLCIRPVTKLMAPDTVSDNVSIVVWKWAEDVVVVEPKPLTSGPTQVYRPPPTASTAVEVLNVEL 300
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LWI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LWI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LWI)

(-) Gene Ontology  (3, 9)

Asymmetric Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 5lwi)
 
  Cis Peptide Bonds
    Ala B:80 - Gly B:81   [ RasMol ]  
    Asp C:85 - Asp C:86   [ RasMol ]  
    Gly B:81 - Thr B:82   [ RasMol ]  
    Gly C:180 - Ala C:181   [ RasMol ]  
    Leu B:109 - Pro B:110   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B3TZF1_9VIRU | B3TZF1: 5lwg
UniProtKB/TrEMBL
        B3TZF1_9VIRU | B3TZF1: 5cdd
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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LWI)