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(-) Description

Title :  SOLUTION STRUCTURE OF RTT103 CTD-INTERACTING DOMAIN BOUND TO A THR4 PHOSPHORYLATED CTD PEPTIDE
 
Authors :  O. Jasnovidova, K. Kubicek, M. Krejcikova, R. Stefl
Date :  14 Sep 16  (Deposition) - 10 May 17  (Release) - 14 Jun 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Transcription, Ctd-Interacting Domain, Rnapii Ctd (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Jasnovidova, M. Krejcikova, K. Kubicek, R. Stefl
Structural Insight Into Recognition Of Phosphorylated Threonine-4 Of Rna Polymerase Ii C-Terminal Domain By Rtt103P.
Embo Rep. V. 18 906 2017
PubMed-ID: 28468956  |  Reference-DOI: 10.15252/EMBR.201643723

(-) Compounds

Molecule 1 - REGULATOR OF TY1 TRANSPOSITION PROTEIN 103
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RTT103, YDR289C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 2 - PRO-SER-TYR-SER-PRO-PTH-SER-PRO-SER-TYR-SER-PRO-THR-SER- PRO-SER
    Chains: B
    Engineered: YES
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1TPO1Mod. Amino AcidPHOSPHOTHREONINE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (0, 0)

(no "Site" information available for 5LVF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LVF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LVF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LVF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LVF)

(-) Exons   (0, 0)

(no "Exon" information available for 5LVF)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lvf A   1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAALEHHHHHH 142
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140  


Chain B from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author ................ Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 5lvf B 143 PSYSPtSPSYSPTSPS 158
                                 | 152      
                               148-TPO
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LVF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LVF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LVF)

(-) Gene Ontology  (10, 10)

NMR Structure(hide GO term definitions)

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  5lvf
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  RT103_YEAST | Q05543
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RT103_YEAST | Q05543: 2km4 2l0i

(-) Related Entries Specified in the PDB File

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