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(-) Description

Title :  MOPEIA VIRUS EXONUCLEASE DOMAIN COMPLEXED WITH MAGNESIUM
 
Authors :  E. L. Yekwa, J. Khourieh, B. Canard, F. Ferron
Date :  19 Aug 16  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mopeia Virus, Exonuclease Magnesium, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. L. Yekwa, J. Khourieh, B. Canard, N. Papageorgiou, F. Ferron
Activity Inhibition And Crystal Polymorphism Induced By Active-Site Metal Swapping
Acta Crystallogr. , Sect. D 2017
PubMed: search

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: EXONUCLEASE DOMAIN, UNP RESIDUES 365-570
    Gene: NP
    Organism Scientific: MOPEIA VIRUS AN20410
    Organism Taxid: 300175
    Synonym: NUCLEOCAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
2ZN2Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:400 , CYS A:507 , HIS A:510 , CYS A:530binding site for residue ZN A 601
2AC2SOFTWAREASP A:390 , GLU A:392 , ASP A:534 , HOH A:719binding site for residue MG A 602
3AC3SOFTWAREGLU B:400 , CYS B:507 , HIS B:510 , CYS B:530binding site for residue ZN B 601
4AC4SOFTWAREASP B:390 , ILE B:391 , GLU B:392 , ASP B:534 , HOH B:790binding site for residue MG B 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LRP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LRP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LRP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LRP)

(-) Exons   (0, 0)

(no "Exon" information available for 5LRP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.......eeeeee.......eeeee.....eeeeee....hhhhhhhhhhhh...hhhhhh....hhhhhhhhhh....eeee..hhhhhhhhhhh.....eeee...hhhhhh.hhhhhhhhhhhhh......eeee.....eeee...hhhhhhhhhhhhhhh.......ee..hhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lrp A 365 GLTYSQTMELKDSMLQLDPNAKTWIDIEGRPEDPVEIAIYQPNNGQYIHFYREPTDIKQFKQDSKHSHGIDIQDLFSVQPGLTSAVIESLPKNMVLSCQGADDIRKLLDSQNRRDIKLIDVSMQKDDARKFEDKIWDEYKHLCRMHTGIVTQKKKRGGKEEVTPHCALLDCLMFEAAVIGSPQIPTPRPVLSRDLVFRTGPPRVVL 570
                                   374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564      


Chain B from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh........eeeee.......eeeee.....eeeeee....hhhhhhhhhhhh...hhhhhh....hhhhhhhhhh....eeee..hhhhhhhhhhh.....eeee...hhhhhh.hhhhhhhhhhhhh......eeee.....eeee...hhhhhhhhhhhhhhh.......ee..hhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lrp B 365 GLTYSQTMELKDSMLQLDPNAKTWIDIEGRPEDPVEIAIYQPNNGQYIHFYREPTDIKQFKQDSKHSHGIDIQDLFSVQPGLTSAVIESLPKNMVLSCQGADDIRKLLDSQNRRDIKLIDVSMQKDDARKFEDKIWDEYKHLCRMHTGIVTQKKKRGGKEEVTPHCALLDCLMFEAAVIGSPQIPTPRPVLSRDLVFRTGPPRVVL 570
                                   374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LRP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LRP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LRP)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  5lrp
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  Q5S581_MOPEI | Q5S581
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q5S581_MOPEI | Q5S581: 5ls4

(-) Related Entries Specified in the PDB File

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