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(-) Description

Title :  CRYSTAL STRUCTURE OF SELF-COMPLEMENTED PSAA, THE MAJOR SUBUNIT OF PH 6 ANTIGEN FROM YERSINIA PESTS, IN COMPLEX WITH CHOLINE
 
Authors :  N. A. Pakharukova, S. Roy, M. M. Rahman, M. Tuitilla, A. V. Zavialov
Date :  03 Aug 16  (Deposition) - 24 Aug 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Ig-Like Fold, Beta Sandwich, Donor-Strand Complementation, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Pakharukova, S. Roy, M. Tuittila, M. M. Rahman, S. Paavilainen, A. K. Ingars, M. Skaldin, U. Lamminmaki, T. Hard, S. Teneberg, A. V. Zavialov
Structural Basis For Myf And Psa Fimbriae-Mediated Tropism Of Pathogenic Strains Of Yersinia For Host Tissues.
Mol. Microbiol. V. 102 593 2016
PubMed-ID: 27507539  |  Reference-DOI: 10.1111/MMI.13481

(-) Compounds

Molecule 1 - PH 6 ANTIGEN,PH 6 ANTIGEN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET101D
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Expression System Vector Type: PLASMID
    Gene: PSAA, YPO1303, Y2882, YP_1289
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632
    Synonym: ADHESIN,ANTIGEN 4,ADHESIN,ANTIGEN 4

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1CHT3Ligand/IonCHOLINE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CHT-1Ligand/IonCHOLINE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CHT2Ligand/IonCHOLINE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1CHT1Ligand/IonCHOLINE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:201 , TYR B:56binding site for residue CHT B 201
2AC2SOFTWAREILE B:77 , ASP B:78 , ASN B:120 , LYS B:122binding site for residue CHT B 202
3AC3SOFTWAREGLY C:54 , GLY C:55 , LEU C:67 , TYR C:68 , TRP C:74 , TRP C:81 , HOH C:310binding site for residue CHT C 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LN4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LN4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LN4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LN4)

(-) Exons   (0, 0)

(no "Exon" information available for 5LN4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....ee.ee....eeeeeeeee......eeeeee.hhhh..eeee....eee.ee...eeehhhheeeee......eeeeeee....ee..eeeeeeeeeeeeee....eeeeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ln4 A   7 TFHVDFAPNTGEIFAGKQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNWYINDDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVFNDKQSTVINSKDVSGEVTVK 139
                                    16        26        36        46        56        66        76        86        96       106       116       126       136   


Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......ee....eeeeeeeee......eeeeee.hhhh..eeee....eee.ee...eeehhhheeeee......eeeeeee....ee...eeeeeeeeeeeee....eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ln4 B   7 TFHVDFAPNTGEIFAGKQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNWYINDDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVFNDKQSTVINSKDVSGEVTVK 139
                                    16        26        36        46        56        66        76        86        96       106       116       126       136   


Chain C from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......ee....eeeeeeee.......eeeeee.hhhh..eeee....eee.ee...eee....eeeee......eeeeeee....ee...eeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ln4 C   7 TFHVDFAPNTGEIFAGKQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNWYINDDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVFNDKQSTVINSKDVSGEVTVK 139
                                    16        26        36        46        56        66        76        86        96       106       116       126       136
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LN4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LN4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LN4)

(-) Gene Ontology  (2, 2)

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  5ln4
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  PSAA_YERPE | P31522
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 Related Entries

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UniProtKB/Swiss-Prot
        PSAA_YERPE | P31522: 4f8l 4f8n 4f8o 4f8p

(-) Related Entries Specified in the PDB File

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