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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ALPHA-DYSTROGLYCAN
 
Authors :  S. Covaceuszach, A. Cassetta, D. Lamba, A. Brancaccio, M. Bozzi, F. Sci M. G. Bigotti, P. V. Konarev
Date :  27 Jul 16  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Dystroglycan, Extraellular Matrix Adhesion, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Covaceuszach, M. Bozzi, M. G. Bigotti, F. Sciandra, P. V. Konarev, A. Brancaccio, A. Cassetta
Structural Flexibility Of Human Alpha-Dystroglycan
Febs Open Bio 2017
PubMed: search  |  Reference-DOI: 10.1002/2211-5463.12259

(-) Compounds

Molecule 1 - DYSTROGLYCAN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PHIS-TRX
    Expression System Taxid: 469008
    Expression System Vector: PLASMID
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 52-315
    Gene: DAG1
    Mutation: YES
    Organ: SKELETAL MUSCLE
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DYSTROPHIN-ASSOCIATED GLYCOPROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:247 , ALA A:285 , GLN A:289 , HOH A:518 , HOH A:528binding site for residue EDO A 401
2AC2SOFTWAREPHE A:217 , SER A:218 , TRP A:260 , LEU A:262 , ASP A:273binding site for residue EDO A 402

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:182 -A:264

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LLK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LLK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LLK)

(-) Exons   (0, 0)

(no "Exon" information available for 5LLK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....eeee.hhhhhh....eeeeee.........eeee....eeee..hhhhheeeeeeeeeeee.....eeeeeeeeeeeeeehhhhh.......eeeeeeee..hhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee............eeee..........eeeeeeeee.........hhhhhhhhhhhhhhhhhh..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5llk A  61 VPTVVGIPDGTAVVGRSFRVTIPTDLIASSGDIIKVSAAGKEALPSWLHWDSQSHTLEGLPLDTDKGVHYISVSATRLGANGSHIPQTSSVFSIEVYPEDHSACAADEPVTVLTVILDADLTKMTPKQRIDLLHRMRSFSEVELHNMKLVPVVNNRLFDMSAFMAGPGNAKKVVENGALLSWKLGCSLNQNSVPDIHGVEAPAREGAMSAQLGYPVVGWHIANKKP 304
                                    70        80        90       100       110       120       130       140       150       160 ||    188       198       208       218       228       238       248       258       268       278       288       298      
                                                                                                                               162|                                                                                                                           
                                                                                                                                181
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LLK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LLK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LLK)

(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DAG1_HUMAN | Q14118: 1eg4 2mk7 5ggp

(-) Related Entries Specified in the PDB File

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