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(-) Description

Title :  FLAVODIIRON CORE OF ESCHERICHIA COLI FLAVORUBREDOXIN IN THE REDUCED FORM.
 
Authors :  C. V. Romao, P. T. Borges, J. B. Vicente, M. A. Carrondo, M. Teixeira, C. F
Date :  27 Jul 16  (Deposition) - 19 Oct 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Flavorubredoxin, Flavodiiron Protein, Diiron Center, Nitric Oxide Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. V. Romao, J. B. Vicente, P. T. Borges, B. L. Victor, P. Lamosa, E. Silva, L. Pereira, T. M. Bandeiras, C. M. Soares, M. A. Carrondo, D. Turner, M. Teixeira, C. Frazao
Structure Of Escherichia Coli Flavodiiron Nitric Oxide Reductase.
J. Mol. Biol. V. 428 4686 2016
PubMed-ID: 27725182  |  Reference-DOI: 10.1016/J.JMB.2016.10.008

(-) Compounds

Molecule 1 - ANAEROBIC NITRIC OXIDE REDUCTASE FLAVORUBREDOXIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NORV, FLRD, YGAI, YGAJ, YGAK, B2710, JW2680
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: FLAVORB

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1FE2Ligand/IonFE (III) ION
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3OXY1Ligand/IonOXYGEN MOLECULE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
3OXY4Ligand/IonOXYGEN MOLECULE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:83 , HIS A:84 , ASP A:166 , HIS A:227 , FE A:502 , OXY A:503binding site for residue FE A 501
2AC2SOFTWAREHIS A:79 , GLU A:81 , HIS A:147 , ASP A:166 , FE A:501 , OXY A:503binding site for residue FE A 502
3AC3SOFTWAREASP A:166 , TYR A:194 , FE A:501 , FE A:502binding site for residue OXY A 503
4AC4SOFTWAREHIS A:23 , TRP A:148 , THR A:260 , MET A:261 , SER A:262 , ASN A:263 , ASN A:264 , THR A:265 , SER A:313 , THR A:314 , MET A:315 , ASN A:316 , ASN A:317 , SER A:345 , HIS A:346 , GLY A:347 , TRP A:348 , SER A:349 , GLY A:350 , TRP A:375 , HOH A:636binding site for residue FMN A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LLD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:146 -His A:147

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LLD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LLD)

(-) Exons   (0, 0)

(no "Exon" information available for 5LLD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:398
                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee..eee....ee....ee....eee..eeee...eeee...hhhhhhhhhhhhhh..hhhhh.eee....hhhhhhhhhhhhh......eeehhhhhhhhhhhhh.....eee.....eee.....eeeeee.........eeeee....eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee....ee...hhhhhhhhhhhhh.....eeeeee....hhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh.eeeee........hhhhhhhhhhhhhhh....eeeeeeee....hhhhhhhhhhhhh..ee...eeee...hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lld A   3 IVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGIAETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALKLCREHGREIARQWALAP 400
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LLD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LLD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LLD)

(-) Gene Ontology  (13, 13)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NORV_ECOLI | Q46877: 2ms3 4d02 5lmc

(-) Related Entries Specified in the PDB File

4d02 4D02 IS THE SAME PROTEIN BUT IN THE OXIDIZED FORM.