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(-) Description

Title :  STRUCTURE OF HANTAVIRUS ENVELOPE GLYCOPROTEIN GC IN POSTFUSION CONFORMATION IN PRESENCE OF 200 MM KCL
 
Authors :  P. Guardado-Calvo, F. A. Rey
Date :  20 Jul 16  (Deposition) - 14 Sep 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Hantavirus, Glycoprotein, Viral Fusion, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Guardado-Calvo, E. A. Bignon, E. Stettner, S. A. Jeffers, J. Perez-Vargas, G. Pehau-Arnaudet, M. A. Tortorici, J. L. Jestin, P. England, N. D. Tischler, F. A. Rey
Mechanistic Insight Into Bunyavirus-Induced Membrane Fusion From Structure-Function Analyses Of The Hantavirus Envelope Glycoprotein Gc.
Plos Pathog. V. 12 05813 2016
PubMed-ID: 27783711  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1005813

(-) Compounds

Molecule 1 - ENVELOPMENT POLYPROTEIN
    Chains: A
    Engineered: YES
    Expression System: DROSOPHILA MELANOGASTER
    Expression System Cell Line: S2 CELLS
    Expression System Common: FRUIT FLY
    Expression System Plasmid: PMT
    Expression System Taxid: 7227
    Gene: GP
    Organism Scientific: HANTAAN VIRUS
    Organism Taxid: 11599
    Synonym: GLYCOPROTEIN PRECURSOR,M POLYPROTEIN, GLYCOPROTEIN GC

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1FUL1Ligand/IonBETA-L-FUCOSE
2K1Ligand/IonPOTASSIUM ION
3NA1Ligand/IonSODIUM ION
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1FUL3Ligand/IonBETA-L-FUCOSE
2K-1Ligand/IonPOTASSIUM ION
3NA-1Ligand/IonSODIUM ION
4NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:105 , PHE A:240 , PRO A:241 , GLY A:242 , ASP A:259 , HOH A:874binding site for residue K A 504
2AC2SOFTWARESER A:243 , HOH A:701binding site for residue NA A 505
3AC3SOFTWAREPHE A:201 , LEU A:204 , GLY A:208 , LEU A:209 , ASN A:280 , GLU A:332 , GLY A:333 , GLY A:340 , THR A:342 , SER A:385 , HOH A:692 , HOH A:779binding site for Poly-Saccharide residues NAG A 501 through FUL A 503 bound to ASN A 280

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:87 -A:122
2A:91 -A:129
3A:103 -A:237
4A:117 -A:248
5A:132 -A:256
6A:158 -A:167
7A:175 -A:184
8A:215 -A:219
9A:322 -A:352
10A:345 -A:397
11A:362 -A:367
12A:398 -A:403

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LK1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LK1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LK1)

(-) Exons   (0, 0)

(no "Exon" information available for 5LK1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:410
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhh.eeeeeeee....eeeeeee.........eeeeeee...eeeeeeee.eeeee.eeeeeeeee.........hhhhh...eeeeeee..................eeeeeeeee..eeeeeeeeeeeeeeeeeeeeee..eeeeeeee...eee...eeeeee..........eeee......eeeee................................eeee.......eeee.....hhhhhhhhhhhhheeee....eee..eeee.......eeeeeeee..............eeeeeeeeeee.......eeeeeeeeee...eeeeeeeeee..eeeeeeeeeee.eeeeeeeee.........eee................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lk1 A   6 TPVWNDNAHGVGSVPMHTDLELDFSLTSSSKYTYRRKLTNPLEEAQSIDLHIEIEEQTIGVDVHALGHWFDGRLNLKTSFHCYGACTKYEYPWHTAKCHYERDYQYETSHGCNPSDCPGVGTGCTACGLYLDQLKPVGSAYKIITIRYSRRVCVQFGEENLCKIIDMNDCFVSRHVKVCIIGTVSKFSQGDTLLFFGPLEGGGLIFKHWCTSTCQFGDPGDIMSPRDKGFLCPEFPGSFRKKCNFATTPICEYDGNMVSGYKKVMATIDSFQSFNTSTMHFTDERIEWKDPDGMLRDHINILVTKDIDFDNLGENPCKIGLQTSSIEGAWGSGVGFTLTCLVSLTECPTFLTSIKACDKAICYGAESVTLTRGQNTVKVSGKGGHSGSTFRCCHGEDCSQIGLHAAAPHL 415
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LK1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LK1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LK1)

(-) Gene Ontology  (20, 20)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GP_HANTV | P08668: 5ljx 5ljy 5ljz 5lk0 5lk2 5lk3

(-) Related Entries Specified in the PDB File

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