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(-) Description

Title :  STRUCTURE OF OXIDISED PENTAERYTHRITOL TETRANITRATE REDUCTASE
 
Authors :  H. Kwon, O. M. Smith, P. C. E. Moody
Date :  08 Jul 16  (Deposition) - 15 Feb 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Petnr, Petn Reductase, Fmn, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Kwon, O. Smith, E. L. Raven, P. C. Moody
Combining X-Ray And Neutron Crystallography With Spectroscopy.
Acta Crystallogr D Struct V. 73 141 2017 Biol
PubMed-ID: 28177310  |  Reference-DOI: 10.1107/S2059798316016314

(-) Compounds

Molecule 1 - PENTAERYTHRITOL TETRANITRATE REDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ONR
    Organism Scientific: ENTEROBACTER CLOACAE
    Organism Taxid: 550

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
2IPA4Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:23 , PRO A:24 , LEU A:25 , THR A:26 , ALA A:58 , GLN A:100 , HIS A:181 , HIS A:184 , ARG A:233 , LEU A:275 , ALA A:302 , GLY A:323 , ARG A:324 , TYR A:351 , IPA A:402 , IPA A:405 , HOH A:563 , HOH A:640 , HOH A:697 , HOH A:757binding site for residue FMN A 401
2AC2SOFTWAREHIS A:184 , THR A:273 , ASP A:274 , LEU A:275 , FMN A:401 , HOH A:719binding site for residue IPA A 402
3AC3SOFTWARETYR A:255 , GLU A:258 , GLU A:259 , HOH A:544 , HOH A:662 , HOH A:928binding site for residue IPA A 403
4AC4SOFTWAREARG A:130 , HOH A:967 , HOH A:1002 , HOH A:1087binding site for residue IPA A 404
5AC5SOFTWARETHR A:26 , TYR A:68 , TYR A:186 , TYR A:351 , FMN A:401 , HOH A:508 , HOH A:520 , HOH A:879binding site for residue IPA A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LGX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:32 -Pro A:33

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LGX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LGX)

(-) Exons   (0, 0)

(no "Exon" information available for 5LGX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eee...eee...............hhhhhhhhhhh.....eeeeeee...............hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhh..ee........eeeee.....eeeee....ee.hhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.eeeee....ee..ee...hhhhhhhhhhhhhhhh...eeeee..........hhhhhhhhhhhh..eeeee...hhhhhhhhhhh....eeeehhhhhhh.hhhhhhhhh......hhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lgx A   2 AEKLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGGAEGYTDYPSL 364
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LGX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LGX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LGX)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:32 - Pro A:33   [ RasMol ]  
 

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  P71278_ENTCL | P71278
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        P71278_ENTCL | P71278: 1gvo 1gvq 1gvr 1gvs 1h50 1h51 1h60 1h61 1h62 1h63 1vyp 1vyr 1vys 2aba 2abb 3f03 3kft 3p62 3p67 3p74 3p7y 3p80 3p81 3p82 3p84 3p8i 3p8j 5lgz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LGX)