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(-) Description

Title :  CRYSTAL STRUCTURE OF CYTOCHROME C - BROMO-TRISULFONATOCALIX[4]ARENE COMPLEXES
 
Authors :  A. M. Doolan, M. L. Rennie, P. B. Crowley
Date :  04 Jul 16  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Cytochrome C, Modified Calixarene, Bromo Group, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. M. Doolan, M. L. Rennie, P. B. Crowley
Crystal Structure Of Cytochrome C - Bromo-Trisulfonatocalix[4]Arene Complexes
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOCHROME C ISO-1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCYC1, YJR048W, J1653
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    SynonymCYTOCHROME C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
16VB3Ligand/IonBROMO-TRISULFONATOCALIX[4]ARENE
2BR2Ligand/IonBROMIDE ION
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:13 , CYS A:14 , CYS A:17 , HIS A:18 , VAL A:28 , GLY A:29 , PRO A:30 , ILE A:35 , SER A:40 , GLY A:41 , TYR A:46 , TYR A:48 , THR A:49 , ASN A:52 , TRP A:59 , MET A:64 , TYR A:67 , THR A:78 , LYS A:79 , MET A:80 , PHE A:82 , LEU A:94 , HOH A:326 , HOH A:330binding site for residue HEM A 201
2AC2SOFTWARE6VB A:205 , 6VB A:206binding site for residue BR A 203
3AC3SOFTWARELYS A:11 , GLN A:16 , GLY A:23 , HIS A:26 , LYS A:27 , GLU A:44 , GLY A:45 , GLY A:84 , LEU A:85 , LYS A:86 , LYS A:87 , HOH A:305 , HOH A:307 , HOH A:308 , HOH A:323 , HOH A:343 , HOH A:347 , HOH A:362 , HOH A:368 , HOH A:375 , HOH A:383 , HOH A:405 , HOH A:412 , HOH A:420binding site for residue 6VB A 204
4AC4SOFTWAREALA A:3 , LYS A:4 , GLU A:21 , LYS A:22 , LYS A:89 , LYS A:100 , BR A:202 , BR A:203 , 6VB A:205 , HOH A:301 , HOH A:341 , HOH A:357 , HOH A:360 , HOH A:384 , HOH A:419binding site for residue 6VB A 206
5AC5SOFTWARESER A:2 , ALA A:3 , LYS A:4 , LYS A:5 , ALA A:7 , LYS A:89 , TYR A:97 , LYS A:100 , BR A:203 , 6VB A:206 , HOH A:304 , HOH A:313 , HOH A:317 , HOH A:359 , HOH A:380binding site for residues BR A 202 and 6VB A 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LFT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LFT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5LFT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh..................................hhhhhhhh...hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 5lft A  -5 AEFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKATE 103
                                ||   5        15        25        35        45        55        65        75        85        95        
                               -1|                                                                                                      
                                 1                                                                                                      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LFT)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 5LFT)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CYC1_YEAST | P000441chh 1chi 1chj 1cie 1cif 1cig 1cih 1crg 1crh 1cri 1crj 1csu 1csv 1csw 1csx 1cty 1ctz 1fhb 1irv 1irw 1kyo 1lms 1nmi 1rap 1raq 1s6v 1u74 1ycc 1yfc 1yic 2b0z 2b10 2b11 2b12 2bcn 2gb8 2hv4 2jqr 2jti 2lir 2lit 2mhm 2n18 2orl 2pcc 2ycc 3cx5 3tyi 4mu8 4n0k 4p4q 4q5p 4qao 4ye1 5cib 5cic 5cid 5cie 5cif 5cig 5cih 5kke 5klu 5kpf 5lyc 5t7h

(-) Related Entries Specified in the PDB File

5kpf 5t8w