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(-) Description

Title :  ISOPIPERITENONE REDUCTASE FROM MENTHA PIPERITA IN COMPLEX WITH NADP
 
Authors :  V. Karuppiah, H. S. Toogood, D. Leys, N. S. Scrutton
Date :  22 Jun 16  (Deposition) - 31 Aug 16  (Release) - 31 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym./Biol. Unit :  A
Keywords :  Short-Chain Dehydrogenases/Reductases (Sdr), Rossmann Fold, Isopiperitenone, Isopulegone, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Lygidakis, V. Karuppiah, R. Hoeven, A. Ni Cheallaigh, D. Leys, J. M. Gardiner, H. S. Toogood, N. S. Scrutton
Pinpointing A Mechanistic Switch Between Ketoreduction And "Ene" Reduction In Short-Chain Dehydrogenases/Reductases.
Angew. Chem. Int. Ed. Engl. V. 55 9596 2016
PubMed-ID: 27411040  |  Reference-DOI: 10.1002/ANIE.201603785

(-) Compounds

Molecule 1 - (-)-ISOPIPERITENONE REDUCTASE
    Chains: A
    EC Number: 1.3.1.82
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM-11
    Expression System Taxid: 562
    Organism Common: PEPPERMINT
    Organism Scientific: MENTHA PIPERITA
    Organism Taxid: 34256

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:12 , ASN A:14 , LYS A:15 , GLY A:16 , ILE A:17 , ARG A:37 , ARG A:41 , LEU A:65 , ASP A:66 , VAL A:67 , THR A:68 , ASN A:93 , ALA A:94 , GLY A:95 , VAL A:180 , SER A:181 , LYS A:242 , PRO A:266 , GLY A:267 , TYR A:268 , ALA A:269 , THR A:271 , ASP A:272 , ILE A:273 , THR A:274 , MPD A:401 , HOH A:516 , HOH A:522 , HOH A:525 , HOH A:555 , HOH A:564 , HOH A:582 , HOH A:597 , HOH A:598 , HOH A:652 , HOH A:677 , HOH A:701binding site for residue NAP A 400
2AC2SOFTWAREGLU A:238 , TYR A:268 , ILE A:273 , NAP A:400 , HOH A:587binding site for residue MPD A 401
3AC3SOFTWARELEU A:199 , ALA A:247 , PHE A:304 , HOH A:585 , HOH A:590 , HOH A:610binding site for residue MPD A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LCX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LCX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LCX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LCX)

(-) Exons   (0, 0)

(no "Exon" information available for 5LCX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhh.hhh.eeeee....hhhhhhhhhhhhhhhh....eeee.......eeee.hhhhhhhhhhhhhhhhhhhh.............eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhh.....hhhhhhhhhhhhhh.........eehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lcx A   5 QRYALVTGANKGIGFEICRQLAEKGIIVILTSRNEKRGLEARQKLLKELNVSENRLVFHQLDVTDLASVAAVAVFIKSKFGKLDILVNNAGVSGVEMVGDVSVFNEYIEADFKALQALEAGAKEEPPFKPKANGEMIEKFEGAKDCVVTNYYGPKRLTQALIPLLQLSPSPRIVNVSSSFGSLLLLWNEWAKGVLGDEDRLTEERVDEVVEVFLKDIKEGKLEESQWPPHFAAERVSKAALNAYTKIAAKKYPSFRINAICPGYAKTDITFHAGPLSVAEAAQVPVKLALLPDGGPSGCFFPRDKALALY 314
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LCX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LCX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LCX)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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        IPIPR_MENPI | Q6WAU1: 5l4s 5ldg

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