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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PH DOMAIN OF MURINE KINDLIN-3
 
Authors :  T. Ni, K. Harlos, R. J. C. Gilbert
Date :  06 Jun 16  (Deposition) - 11 Jan 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.23
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Pleckstrin Homology Domain, Membrane Binding, Integrin Activation, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Ni, A. C. Kalli, F. B. Naughton, L. A. Yates, O. Naneh, M. Kozorog, G. Anderluh, M. S. Sansom, R. J. Gilbert
Structure And Lipid-Binding Properties Of The Kindlin-3 Pleckstrin Homology Domain.
Biochem. J. V. 474 539 2017
PubMed-ID: 27974389  |  Reference-DOI: 10.1042/BCJ20160791

(-) Compounds

Molecule 1 - FERMITIN FAMILY HOMOLOG 3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI B
    Expression System Taxid: 37762
    Expression System Variant: B834
    Gene: FERMT3, KIND3, URP2
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: KINDLIN-3,UNC-112-RELATED PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION

(-) Sites  (0, 0)

(no "Site" information available for 5L81)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L81)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ala A:390 -Pro A:391
2Ala B:390 -Pro B:391
3Gly B:392 -Asp B:393

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L81)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L81)

(-) Exons   (0, 0)

(no "Exon" information available for 5L81)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee..........eeeeeeee..eeeee...........eeee....eeeeeee....eeeeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l81 A 345 SLTTIPELKDHLRIFRPRKLTLKGYRQYWVVFKDTTLSYYKSQDEAPGDPTQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYAQWMAACRLASKGRTMADSSYASEVQAILAFLSLQR 477
                                   354       364       374       384       394       404       414       424       434       444       454       464       474   


Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeeee..........eeeeeeee..eeeee...........eeee.hhheeeeeee....eeeeeeee...eeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l81 B 344 DSLTTIPELKDHLRIFRPRKLTLKGYRQYWVVFKDTTLSYYKSQDEAPGDPTQQLNLKGCEVVPDVNVSGQKFCIKLLVPGMSEIYLRCQDEQQYAQWMAACRLASKGRTMADSSYASEVQAILAFLSLQRA 478
                                   353       363       373       383       393       403       413       423|      436       446       456       466       476  
                                                                                                         423|                                                   
                                                                                                          427
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L81)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L81)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L81)

(-) Gene Ontology  (15, 15)

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  Cis Peptide Bonds
    Ala A:390 - Pro A:391   [ RasMol ]  
    Ala B:390 - Pro B:391   [ RasMol ]  
    Gly B:392 - Asp B:393   [ RasMol ]  
 
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  5l81
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