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(-) Description

Title :  X-RAY STRUCTURE OF TRIATOMA VIRUS EMPTY CAPSID
 
Authors :  R. Sanchez-Eugenia
Date :  03 Jun 16  (Deposition) - 31 Aug 16  (Release) - 07 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (60x)
Keywords :  Dicistroviridae, Rna Release, Uncoating, Capsid Disassembly, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sanchez-Eugenia, A. Durana, I. Lopez-Marijuan, G. A. Marti, D. M. Guerin
X-Ray Structure Of Triatoma Virus Empty Capsid: Insights Into The Mechanism Of Uncoating And Rna Release In Dicistroviruses.
J. Gen. Virol. V. 97 2769 2016
PubMed-ID: 27519423  |  Reference-DOI: 10.1099/JGV.0.000580

(-) Compounds

Molecule 1 - CAPSID PROTEIN
    Chains: A
    Organism Scientific: TRIATOMA VIRUS
    Organism Taxid: 103442
 
Molecule 2 - CAPSID PROTEIN
    Chains: B
    Organism Scientific: TRIATOMA VIRUS
    Organism Taxid: 103442
 
Molecule 3 - CAPSID PROTEIN
    Chains: C
    Organism Scientific: TRIATOMA VIRUS
    Organism Taxid: 103442

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (60x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5L7O)

(-) Sites  (0, 0)

(no "Site" information available for 5L7O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L7O)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Leu B:110 -Pro B:111
2Thr C:44 -Pro C:45
3Arg C:200 -Pro C:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L7O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L7O)

(-) Exons   (0, 0)

(no "Exon" information available for 5L7O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh......hhhhhh...eeeeee...eeee........eeee........eeee......hhhhhhhh.eeeee..eeeeeee........eeeeeee.........ee..........eeeee......eeeee........ee...................eeeee.....eeeee......eeeee.....eee.hhhhh............hhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l7o A  35 DEQPSQECIGERILSFSELIKRNSWRYVSDEKSLIYPAYAFDNPAAMYTAADKLPVWTLTPRSGFPTLLTSIGAMYAFYRGGIRLKIVPGVADQPKPLVEVALFTMQDQGYIIKANDYSTDFCSSNIYENFVTKGIAEVQTPYYSRVNTSVVSAPVLYNAGNISPLMPNVMYKITSNSSNILLGHSAADDFRFGFLLGAPLAISATALRDNFTGSSATVSLPTFSNFYLS 264
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264


Chain B from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh..eeeeeeeee.......eeeeeeehhhhhhhhhhhhhh...eeeeeeeeeeee......eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeee.....eeeeee........ee........eeeeeeeeeeee.....eeeeeeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l7o B  77 THSIIDFLERPQFIGSFLWNTSDIENKEIFSLKLPDALMSPMIREKLSGFTSFSASTVFHIQVNAHPFQCGRLVLAAVPVPDILPLHRLNMLSFDVSNVITLPHVQLDISKETEVLLKIPYVSPFVQYDLVTKFTPWAAFLAHVYAPLNTPSAASLQVNVFAHFEDIKLGFPTSAIVAQ 255
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246         


Chain C from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............................ee.......................hhhhhhh..eeeeeeeee.......eeeeee.....ee..........eehhhhhhhh.eeeee..eeeeeee.....ee.eeeeeeee...............hhhhh.eeeee.....eeeeee........ee....ee........ee..........hhhhh.eeeeeee....ee.......eeeeeeeeee....eeeee....eee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l7o C   1 SKPLTTIPPTIVVQRPSQYFNNADGVDQGLPLSLKYGNEVILKTPFAGTSSDEMALEYVLKIPNYFSRFKYSSTSLPKQVLWTSPVHPQIIRNHVTVVDAPGQPTLLAYATGFFKYWRGGLVYTFRFVKTNYHSGRVQITFHPFVGYDDVMDSDGKIVRDEYVYRVVVDLRDQTEATLVVPFTSLTPYKVCADVFNSANRPKYNYEPRDFKVYDNTTDQFFTGTLCVSALTPLVSSSAVVSSTIDVLVEVKASDDFEVAVPNTPLWLPVDSLTERP 276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L7O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L7O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L7O)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5l7o)
 
  Cis Peptide Bonds
    Arg C:200 - Pro C:201   [ RasMol ]  
    Leu B:110 - Pro B:111   [ RasMol ]  
    Thr C:44 - Pro C:45   [ RasMol ]  
 
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(-) Related Entries Specified in the PDB File

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